Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   SGW57_RS09300 Genome accession   NZ_CP139025
Coordinates   1798044..1799126 (+) Length   360 a.a.
NCBI ID   WP_000370984.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70484     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1793044..1804126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW57_RS09280 - 1793422..1794492 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  SGW57_RS09285 - 1794810..1795865 (+) 1056 WP_000258151.1 MraY family glycosyltransferase -
  SGW57_RS09290 - 1796029..1796670 (-) 642 WP_000192947.1 YigZ family protein -
  SGW57_RS09295 fakB1 1796814..1797680 (+) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  SGW57_RS09300 comFA 1798044..1799126 (+) 1083 WP_000370984.1 DEAD/DEAH box helicase Machinery gene
  SGW57_RS09305 - 1799119..1799793 (+) 675 WP_001057973.1 ComF family protein -
  SGW57_RS09310 raiA 1799854..1800426 (+) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  SGW57_RS09315 secA 1800840..1803371 (+) 2532 WP_000506536.1 preprotein translocase subunit SecA -
  SGW57_RS09320 - 1803413..1803511 (+) 99 WP_001791369.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42016.52 Da        Isoelectric Point: 9.6568

>NTDB_id=828935 SGW57_RS09300 WP_000370984.1 1798044..1799126(+) (comFA) [Staphylococcus aureus strain DA70484]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPLENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSIYKQKITKLTYVHSEDVFRFEKVEQLRNGQYDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=828935 SGW57_RS09300 WP_000370984.1 1798044..1799126(+) (comFA) [Staphylococcus aureus strain DA70484]
ATGGATAATGTAACAAGATATAAAATAACAGAAAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
ATCGGAACAACAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGACGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCTCGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAACAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGATTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACAATACGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TAGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGTGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.233

94.167

0.369