Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   H7677_RS01075 Genome accession   NZ_AP023391
Coordinates   202772..203485 (+) Length   237 a.a.
NCBI ID   WP_172079028.1    Uniprot ID   -
Organism   Streptococcus suis strain DAT299     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 197772..208485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7677_RS01065 (DAT299_01760) treC 198839..200464 (-) 1626 WP_184493767.1 alpha,alpha-phosphotrehalase -
  H7677_RS01070 (DAT299_01770) treP 200545..202539 (-) 1995 WP_184493769.1 PTS system trehalose-specific EIIBC component -
  H7677_RS01075 (DAT299_01780) treR 202772..203485 (+) 714 WP_172079028.1 trehalose operon repressor Regulator
  H7677_RS01080 (DAT299_01790) - 203543..203854 (+) 312 WP_002935948.1 hypothetical protein -
  H7677_RS01085 (DAT299_01800) - 203851..204399 (+) 549 WP_002935945.1 CvpA family protein -
  H7677_RS01090 (DAT299_01810) - 204950..207283 (+) 2334 WP_184493771.1 endonuclease MutS2 -
  H7677_RS01095 (DAT299_01820) - 207307..207960 (+) 654 WP_024386974.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27199.08 Da        Isoelectric Point: 7.3095

>NTDB_id=82883 H7677_RS01075 WP_172079028.1 202772..203485(+) (treR) [Streptococcus suis strain DAT299]
MKKYQEIYNNLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=82883 H7677_RS01075 WP_172079028.1 202772..203485(+) (treR) [Streptococcus suis strain DAT299]
ATGAAAAAATACCAAGAAATTTATAATAACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAACAGCTCCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAGCAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515

Multiple sequence alignment