Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   SGI39_RS03335 Genome accession   NZ_CP138892
Coordinates   715571..717352 (+) Length   593 a.a.
NCBI ID   WP_000983669.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 1315     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 710571..722352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGI39_RS03325 (SGI39_03325) ltaS 711465..713405 (+) 1941 WP_000098285.1 polyglycerol-phosphate lipoteichoic acid synthase LtaS -
  SGI39_RS03330 (SGI39_03330) - 713676..715559 (+) 1884 WP_217654607.1 ABC-F family ATP-binding cassette domain-containing protein -
  SGI39_RS03335 (SGI39_03335) recQ 715571..717352 (+) 1782 WP_000983669.1 DNA helicase RecQ Machinery gene
  SGI39_RS03340 (SGI39_03340) - 717573..718550 (+) 978 WP_000589260.1 ABC transporter ATP-binding protein -
  SGI39_RS03345 (SGI39_03345) - 718543..720057 (+) 1515 WP_000180992.1 ABC transporter permease/substrate-binding protein -
  SGI39_RS03350 (SGI39_03350) hisC 720297..721352 (+) 1056 WP_217654608.1 histidinol-phosphate transaminase -
  SGI39_RS03355 (SGI39_03355) - 721513..722055 (+) 543 WP_000197261.1 5'-3'-deoxyribonucleotidase -

Sequence

Protein


Download         Length: 593 a.a.        Molecular weight: 68151.02 Da        Isoelectric Point: 6.6167

>NTDB_id=828824 SGI39_RS03335 WP_000983669.1 715571..717352(+) (recQ) [Staphylococcus aureus strain 1315]
MMQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKDQVDQLKAMGIQ
AAFLNSSLTQKEQQHIEKELTSGNIQFLYVAPERFENRYFLNLLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFM
LPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFILDYIKTHDEDAGIIYCSTRKQVE
ELQEALESQNIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRD
GLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDK
SYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEI
LMCDTSIKKLLSNEVEVFTTPFKQKATEKVFINTVEGVDRALFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPAS
KQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV

Nucleotide


Download         Length: 1782 bp        

>NTDB_id=828824 SGI39_RS03335 WP_000983669.1 715571..717352(+) (recQ) [Staphylococcus aureus strain 1315]
ATGATGCAACAAACATTATCGCATTACTTTGGGTATGAAACGTTTCGACCAGGACAAGAAGAAATTATTAGCAAAGTATT
AGACCATCGTAATGTGCTTGGTGTCTTACCAACTGGTGGGGGTAAGTCTATATGCTATCAAGTACCAGGTTTATTGTTAG
GTGGTACAACGATTGTTATAAGTCCACTAATTTCATTAATGAAAGATCAAGTGGATCAATTAAAGGCAATGGGGATTCAA
GCTGCTTTTTTAAACAGTAGTTTGACTCAAAAAGAACAACAACATATTGAAAAAGAATTAACAAGTGGGAATATTCAATT
TTTATATGTTGCACCAGAACGATTTGAAAATCGATATTTTTTAAATTTGCTTCAACGTATCAAGATTCATTTAGTGGCGT
TTGATGAAGCGCATTGTATATCTAAATGGGGACATGATTTCAGGCCGAGTTACCAAAATGTTATTTCAAAAGTGTTTATG
TTACCACAAGATTTTACAATTATTGCATTGACAGCAACTGCAACAGTTGAAGTACAGCAAGATATTAGAGAAAAGTTAAA
TATCGCTCAAACTGATCAAATTAAAACGAGTACTAAGCGTAGAAACTTAATTTTTAAAGTAAATCCTACTTATCAACGTC
AAAAATTTATATTGGATTATATTAAAACACACGATGAAGATGCAGGTATTATTTATTGTTCTACACGTAAGCAAGTTGAA
GAGCTTCAAGAAGCCTTAGAAAGCCAGAACATTGAAAGTGTTATATATCATGCAGGTTTGAGCAATAAAGAAAGAGAAGA
AGCGCAGAATGATTTCTTATTTGATCGTGTTAAAGTAGTCGTTGCTACAAATGCTTTTGGTATGGGTATTGATAAATCCA
ATGTACGCTTTGTTATTCATTATAATATGCCTGGAGATTTAGAATCTTATTATCAAGAAGCGGGTCGTGCAGGTCGTGAC
GGGTTGAAAAGTGAATGTATTTTGTTATTTAGCGAACGCGATATCAATTTACACGAGTATTTTATAACAGTCTCTCAAGC
TGATGATGACTATAAAGATAAAATGGGTGAAAAGTTAACTAAAATGATTCAATATACAAAAACAAAAAAATGTTTAGAAG
CAACAATTGTCCATTATTTTGAACCGAATGAAAAATTAGAAGAATGTGAACAATGTAGTAATTGTGTTCAACAAGATAAA
TCATATAATATGACACAAGAAGCTAAGATGATTATTAGTTGCATCGCTCGTATGAAACAACAAGAGAGTTATAGTGTTAT
CATCCAAGTATTAAGAGGAGAGTCAACAGATTATATTAAGTATAAAGGTTATGACCAAATTTCAACCCATGGTTTAATGA
AAGGTTACACAACATCAGAATTAAGTCACTTAATAGATGAATTAAGATTCAAAGGGTTCTTAAATGAAAATGATGAAATA
TTAATGTGTGATACTTCAATTAAAAAATTACTCAGTAATGAAGTAGAAGTATTCACAACACCATTTAAGCAAAAAGCGAC
TGAAAAAGTATTTATAAATACGGTTGAAGGGGTTGACCGAGCATTATTCAGTCAGTTGGTAGAAGTTCGTAAAAAGTTAA
GTGACAAATTAACGATAGCACCTGTAAGTATATTTTCTGATTACACGCTAGAGGAATTTGCTAAACGTAAGCCTGCTTCG
AAACAAGATATGATTAATATTGATGGCGTAGGTAGTTACAAATTAAAACATTATTGTCCAGCATTTTTAGAAACGATTCA
AAATTATAAAGCCAAAGTATAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(217-320)

HRDC domain (HRDC)

(520-586)

RecQ zinc-binding (RecQ_Zn_bind)

(333-395)

RQC domain (RQC)

(400-500)

DEAD/DEAH box helicase (DEAD)

(17-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

42.542

99.494

0.423