Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   SGQ77_RS05925 Genome accession   NZ_CP138886
Coordinates   1243531..1244682 (+) Length   383 a.a.
NCBI ID   WP_000020346.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 1061     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1238531..1249682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGQ77_RS05900 (SGQ77_05900) - 1239361..1240647 (+) 1287 WP_000664770.1 pitrilysin family protein -
  SGQ77_RS05905 (SGQ77_05905) - 1240647..1241351 (+) 705 WP_000646226.1 SDR family NAD(P)-dependent oxidoreductase -
  SGQ77_RS05910 (SGQ77_05910) - 1241456..1242283 (+) 828 WP_000214890.1 YmfK family protein -
  SGQ77_RS05915 (SGQ77_05915) - 1242302..1242694 (+) 393 WP_000859443.1 RodZ family helix-turn-helix domain-containing protein -
  SGQ77_RS05920 (SGQ77_05920) pgsA 1242728..1243306 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SGQ77_RS05925 (SGQ77_05925) cinA 1243531..1244682 (+) 1152 WP_000020346.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  SGQ77_RS05930 (SGQ77_05930) recA 1244847..1245890 (+) 1044 WP_000368167.1 recombinase RecA Machinery gene
  SGQ77_RS05935 (SGQ77_05935) rny 1246244..1247803 (+) 1560 WP_217654632.1 ribonuclease Y -
  SGQ77_RS05940 (SGQ77_05940) - 1248057..1249045 (-) 989 Protein_1160 transposase -
  SGQ77_RS05945 (SGQ77_05945) - 1249331..1249546 (-) 216 WP_000026308.1 hypothetical protein -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43237.52 Da        Isoelectric Point: 6.1914

>NTDB_id=828673 SGQ77_RS05925 WP_000020346.1 1243531..1244682(+) (cinA) [Staphylococcus aureus strain 1061]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNFEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=828673 SGQ77_RS05925 WP_000020346.1 1243531..1244682(+) (cinA) [Staphylococcus aureus strain 1061]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCGGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
TGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTCATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433