Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QL049_RS05935 Genome accession   NZ_CP124856
Coordinates   1308480..1309454 (-) Length   324 a.a.
NCBI ID   WP_014613820.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain 452964 isolate human     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1303480..1314454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL049_RS05900 (QL049_05900) gcvT 1304054..1305145 (-) 1092 WP_015729161.1 glycine cleavage system aminomethyltransferase GcvT -
  QL049_RS05905 (QL049_05905) - 1305303..1305830 (-) 528 WP_014613826.1 shikimate kinase -
  QL049_RS12225 - 1305994..1306479 (-) 486 WP_080552896.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QL049_RS05915 (QL049_05915) - 1306385..1306585 (-) 201 WP_309256016.1 hypothetical protein -
  QL049_RS05920 (QL049_05920) comGD 1306690..1307130 (-) 441 WP_063284397.1 competence type IV pilus minor pilin ComGD -
  QL049_RS05925 (QL049_05925) comGC 1307108..1307431 (-) 324 WP_015729165.1 competence type IV pilus major pilin ComGC Machinery gene
  QL049_RS05930 (QL049_05930) comGB 1307444..1308511 (-) 1068 WP_014613821.1 competence type IV pilus assembly protein ComGB -
  QL049_RS05935 (QL049_05935) comGA 1308480..1309454 (-) 975 WP_014613820.1 competence type IV pilus ATPase ComGA Machinery gene
  QL049_RS05940 (QL049_05940) - 1309615..1310244 (-) 630 WP_037542865.1 MBL fold metallo-hydrolase -
  QL049_RS05945 (QL049_05945) - 1310257..1310568 (-) 312 WP_014613818.1 MTH1187 family thiamine-binding protein -
  QL049_RS05950 (QL049_05950) - 1310569..1311555 (-) 987 WP_014613817.1 ROK family glucokinase -
  QL049_RS05955 (QL049_05955) - 1311552..1311755 (-) 204 WP_014613816.1 YqgQ family protein -
  QL049_RS05960 (QL049_05960) - 1311757..1313196 (-) 1440 WP_014613815.1 rhomboid family intramembrane serine protease -
  QL049_RS05965 (QL049_05965) - 1313215..1313754 (-) 540 WP_037542863.1 5-formyltetrahydrofolate cyclo-ligase -
  QL049_RS05970 (QL049_05970) rpmG 1313904..1314053 (-) 150 WP_014613813.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36846.58 Da        Isoelectric Point: 7.5584

>NTDB_id=828521 QL049_RS05935 WP_014613820.1 1308480..1309454(-) (comGA) [Staphylococcus pseudintermedius strain 452964 isolate human]
MQLLLDHVIQFALQNEASDIHFIPSQSQVEVKLRVKDQLVLYDTLNLETYQKLLTLLKYQAGLDISTRHKAQSGRYIYEH
KALYYLRVSTLPLNLGTESCVIRITPQYFQNAKAHSVLDIKSNMEKKQGLILFSGPTGAGKSTLMYQMVVYAKQKLNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDSHIARDVIQASLSGHLVLSTIHANDCQGVLL
RLIEMGLSHQDLSQSINLIINQRLITTKNDQRQLVYETMDQQEIHYFLNNNFQLPTAFTSLSHKLQLLNKEGVIDEKILR
KYTI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=828521 QL049_RS05935 WP_014613820.1 1308480..1309454(-) (comGA) [Staphylococcus pseudintermedius strain 452964 isolate human]
ATGCAACTACTATTAGATCATGTAATACAATTTGCACTTCAAAATGAGGCATCAGACATTCATTTTATCCCATCACAATC
ACAAGTCGAAGTGAAACTCAGAGTGAAAGATCAACTTGTATTATATGACACATTAAATCTAGAAACGTATCAAAAATTGT
TAACTTTGTTGAAATACCAAGCTGGATTAGATATTTCGACACGCCACAAAGCGCAAAGTGGGCGCTATATTTATGAACAT
AAAGCGTTATATTATTTAAGAGTGTCCACGTTACCTTTAAACTTAGGTACTGAAAGTTGTGTTATTCGTATTACACCCCA
ATATTTTCAAAATGCGAAAGCTCATAGTGTATTAGACATCAAATCTAATATGGAGAAAAAGCAAGGTTTAATTCTGTTTA
GCGGGCCTACAGGTGCAGGAAAGAGCACGTTAATGTATCAAATGGTCGTCTATGCTAAACAAAAGTTAAACCTGAATATT
ATCACAATAGAAGACCCGGTCGAGCAGCTTGTGAACGGCATTACGCAAATTTCCGTTAACGAAAAAGCTGATATTACGTA
TGGATCGTCGTTAAAAGCAATTCTTCGTTGTGATCCAGATGTCATCTTAATTGGTGAGATTCGTGACAGTCATATTGCAA
GGGACGTTATACAAGCGAGTTTAAGTGGGCATTTAGTATTGTCGACGATACACGCCAATGATTGTCAAGGGGTGCTCCTT
AGACTGATTGAAATGGGACTCTCTCACCAAGATTTATCTCAATCTATCAATCTCATCATCAATCAAAGACTCATTACAAC
AAAAAACGACCAGCGACAACTCGTCTATGAAACGATGGATCAACAGGAGATTCATTACTTTTTGAATAATAACTTCCAAC
TACCTACTGCTTTCACAAGCCTTTCTCATAAGCTTCAACTTCTGAATAAAGAGGGGGTTATAGATGAAAAGATTTTACGA
AAGTATACGATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

58.514

99.691

0.583
  comGA Staphylococcus aureus N315

58.514

99.691

0.583