Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QGN23_RS11500 Genome accession   NZ_CP124855
Coordinates   2530282..2531628 (+) Length   448 a.a.
NCBI ID   WP_282904441.1    Uniprot ID   -
Organism   Chryseobacterium gotjawalense strain wdc7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2525282..2536628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QGN23_RS11485 (QGN23_11485) yidC 2525865..2527676 (-) 1812 WP_282904439.1 membrane protein insertase YidC -
  QGN23_RS11490 (QGN23_11490) - 2527841..2529448 (-) 1608 WP_282904440.1 CTP synthase -
  QGN23_RS11495 (QGN23_11495) - 2529661..2530188 (+) 528 WP_133439456.1 YceI family protein -
  QGN23_RS11500 (QGN23_11500) radA 2530282..2531628 (+) 1347 WP_282904441.1 DNA repair protein RadA Machinery gene
  QGN23_RS11505 (QGN23_11505) - 2531702..2531932 (+) 231 WP_282904442.1 hypothetical protein -
  QGN23_RS11510 (QGN23_11510) - 2531922..2532266 (+) 345 WP_282904443.1 type II toxin-antitoxin system PemK/MazF family toxin -
  QGN23_RS11515 (QGN23_11515) - 2532266..2532838 (+) 573 WP_282904444.1 ACP phosphodiesterase -
  QGN23_RS11520 (QGN23_11520) - 2532835..2533350 (-) 516 WP_282904445.1 DUF6702 family protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49578.15 Da        Isoelectric Point: 6.3224

>NTDB_id=828503 QGN23_RS11500 WP_282904441.1 2530282..2531628(+) (radA) [Chryseobacterium gotjawalense strain wdc7]
MAKVKTAYLCQNCGSQHPQWLGQCKNCGEWNTLVEEIVEKSPAKSFSDRSKQHIINIIEVETFEEPRITTPSEELNRVLG
GGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKTILYVSGEESASQIKMRADRLTELQNPNCFLFTETSVEKILHEAKKLK
PDFLIVDSIQTLQSQLIESSPGTVSQIRECSNEIIKFSKETNTPTFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNHL
FRLLRASKNRFGSTAEIGIYEMVSQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLIEIQALVSTAVYGTPQRSC
TGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTGDPALDLAVVASILSSNEDIAISEHFCFAGEIGLSGEIRPIP
QIEQRISEAEKLGYEKIFVSNLNKIPKKKYGIIVEEVSKIEDFHERLF

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=828503 QGN23_RS11500 WP_282904441.1 2530282..2531628(+) (radA) [Chryseobacterium gotjawalense strain wdc7]
ATGGCAAAAGTGAAAACAGCATATCTGTGTCAGAACTGTGGGTCGCAGCATCCGCAGTGGTTGGGACAGTGCAAGAATTG
TGGCGAGTGGAATACTTTGGTGGAAGAGATTGTTGAAAAATCTCCCGCGAAAAGTTTTTCTGACCGGTCGAAACAGCATA
TCATCAATATTATCGAGGTTGAAACTTTCGAAGAGCCCCGAATTACAACGCCTTCTGAAGAACTGAACCGCGTTCTCGGT
GGCGGAATTGTTTTGGGTTCCGTGACTTTAATTGGGGGCGAACCTGGAATAGGAAAATCGACCTTGCTGCTCCAGTTGGC
ACTGAAAATGAAGAAAACTATTCTTTATGTTTCCGGTGAAGAAAGCGCATCCCAAATAAAAATGCGCGCTGACCGACTTA
CGGAACTGCAAAATCCAAACTGCTTTCTTTTTACCGAAACCTCGGTGGAAAAGATTCTGCACGAAGCTAAAAAGCTGAAG
CCGGATTTTTTGATTGTCGACTCTATTCAAACATTACAAAGCCAGTTGATTGAGAGCTCGCCCGGAACGGTTTCGCAGAT
TCGGGAATGTTCGAACGAGATTATTAAGTTTTCTAAAGAAACCAATACGCCGACTTTTTTAGTCGGACATATTACAAAAG
ACGGCCAGATCGCAGGTCCGAAAGTTTTGGAGCACATGGTAGATGTGGTGCTGAATTTTGACGGTGACCGAAATCATTTG
TTCCGATTATTGAGAGCGAGTAAAAACCGTTTCGGGTCGACGGCCGAAATCGGGATTTATGAAATGGTTTCGCAAGGTTT
AAAGGAGATAAAAAATCCTTCTGAGATTTTGATCACCAAGAAATTCGAAGAACTTTCCGGGAATTCTGTCGCGGTAACTT
TAGAAGGAAACCGTCCGATGCTGATAGAAATTCAGGCATTGGTAAGTACCGCAGTTTATGGTACGCCGCAAAGAAGTTGC
ACCGGTTTTGATTCGAAAAGGCTCAATATGCTTTTGGCGGTTTTAGAAAAAAGAGCCGGTTTTCAGTTGGGCGCGAAAGA
TGTTTTCCTGAATATTACAGGCGGAATAAAAACGGGAGATCCGGCTTTGGATTTGGCGGTGGTGGCTTCGATTCTCTCTT
CGAATGAAGATATTGCGATATCGGAACATTTTTGTTTTGCCGGAGAAATCGGGTTGAGTGGAGAAATCCGTCCGATTCCG
CAGATTGAACAAAGGATTTCGGAAGCAGAGAAATTGGGTTACGAGAAAATATTTGTTTCTAATTTAAATAAAATTCCGAA
AAAGAAATATGGGATTATTGTGGAAGAAGTGAGTAAGATTGAGGATTTTCATGAACGGCTGTTTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(337-422)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.894

100

0.493
  radA Streptococcus mitis NCTC 12261

47.692

100

0.484
  radA Streptococcus pneumoniae Rx1

49.409

94.42

0.467
  radA Streptococcus pneumoniae D39

49.409

94.42

0.467
  radA Streptococcus pneumoniae R6

49.409

94.42

0.467
  radA Streptococcus pneumoniae TIGR4

49.409

94.42

0.467
  radA Streptococcus mitis SK321

49.409

94.42

0.467