Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   QJ053_RS10415 Genome accession   NZ_CP124853
Coordinates   2076222..2076938 (+) Length   238 a.a.
NCBI ID   WP_410530097.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ED83     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2071222..2081938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJ053_RS10385 (QJ053_10380) - 2071440..2072066 (+) 627 WP_000522388.1 nitroreductase family protein -
  QJ053_RS10390 (QJ053_10385) - 2072427..2073212 (+) 786 WP_000867948.1 carbon-nitrogen family hydrolase -
  QJ053_RS10395 hld 2073810..2073890 (-) 81 WP_000046022.1 delta-hemolysin -
  QJ053_RS10400 (QJ053_10395) agrB 2074180..2074749 (+) 570 WP_001105707.1 accessory gene regulator AgrB -
  QJ053_RS10405 (QJ053_10400) agrD 2074746..2074886 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  QJ053_RS10410 (QJ053_10405) agrC 2074911..2076203 (+) 1293 WP_410530241.1 quorum-sensing sensor histidine kinase AgrC -
  QJ053_RS10415 (QJ053_10410) agrA 2076222..2076938 (+) 717 WP_410530097.1 quorum-sensing response regulator AgrA Regulator
  QJ053_RS10420 (QJ053_10415) - 2077010..2077117 (+) 108 WP_001790167.1 hypothetical protein -
  QJ053_RS10425 (QJ053_10420) - 2077305..2078264 (-) 960 WP_410530242.1 carbohydrate kinase family protein -
  QJ053_RS10430 (QJ053_10425) - 2078261..2079745 (-) 1485 WP_001791588.1 sucrose-6-phosphate hydrolase -
  QJ053_RS10435 (QJ053_10430) - 2079894..2080844 (-) 951 WP_000790325.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27919.93 Da        Isoelectric Point: 6.0927

>NTDB_id=828443 QJ053_RS10415 WP_410530097.1 2076222..2076938(+) (agrA) [Staphylococcus aureus strain ED83]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFIYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=828443 QJ053_RS10415 WP_410530097.1 2076222..2076938(+) (agrA) [Staphylococcus aureus strain ED83]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACGTATTTAACATTTATCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCTAAAGATAATAGCGTTGAAACGATTGAGTTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGTCATAATATCGAATCTATTG
ATTCGAAAGAGCGTATTGTTTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.58

100

0.996