Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QJ053_RS07995 Genome accession   NZ_CP124853
Coordinates   1635061..1635747 (-) Length   228 a.a.
NCBI ID   WP_410530183.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ED83     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1630061..1640747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJ053_RS07975 (QJ053_07970) rpsT 1630975..1631226 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  QJ053_RS07980 (QJ053_07975) holA 1631271..1632245 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  QJ053_RS07985 (QJ053_07980) comEC 1632302..1634503 (-) 2202 WP_410530182.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QJ053_RS07990 (QJ053_07985) - 1634508..1634969 (-) 462 WP_000439692.1 ComE operon protein 2 -
  QJ053_RS07995 (QJ053_07990) comEA 1635061..1635747 (-) 687 WP_410530183.1 helix-hairpin-helix domain-containing protein Machinery gene
  QJ053_RS08000 (QJ053_07995) - 1635787..1636503 (-) 717 WP_000084835.1 class I SAM-dependent DNA methyltransferase -
  QJ053_RS08005 (QJ053_08000) rsfS 1636506..1636859 (-) 354 WP_001088020.1 ribosome silencing factor -
  QJ053_RS08010 (QJ053_08005) yqeK 1636860..1637444 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QJ053_RS08015 (QJ053_08010) nadD 1637434..1638003 (-) 570 WP_000822938.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  QJ053_RS08020 (QJ053_08015) yhbY 1638006..1638296 (-) 291 WP_000955232.1 ribosome assembly RNA-binding protein YhbY -
  QJ053_RS08025 (QJ053_08020) aroE 1638300..1639106 (-) 807 WP_000666750.1 shikimate dehydrogenase -
  QJ053_RS08030 (QJ053_08025) yqeH 1639120..1640220 (-) 1101 WP_001280134.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25737.34 Da        Isoelectric Point: 9.5360

>NTDB_id=828432 QJ053_RS07995 WP_410530183.1 1635061..1635747(-) (comEA) [Staphylococcus aureus strain ED83]
MVLLYQFLLRYKDFLAQWKLYILSAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLNSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=828432 QJ053_RS07995 WP_410530183.1 1635061..1635747(-) (comEA) [Staphylococcus aureus strain ED83]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAGCTCAATGGAAGTTATATATTCTAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAATTCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.035

99.561

0.956
  comEA Staphylococcus aureus N315

96.035

99.561

0.956