Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QKW11_RS17275 Genome accession   NZ_CP124851
Coordinates   3541037..3541726 (-) Length   229 a.a.
NCBI ID   WP_199776864.1    Uniprot ID   -
Organism   Bacillus velezensis strain SF305     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3536037..3546726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QKW11_RS17240 (QKW11_17215) fliW 3536128..3536559 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  QKW11_RS17245 (QKW11_17220) - 3536589..3537158 (-) 570 WP_007407476.1 DUF6470 family protein -
  QKW11_RS17250 (QKW11_17225) flgL 3537249..3538166 (-) 918 WP_015418330.1 flagellar hook-associated protein FlgL -
  QKW11_RS17255 (QKW11_17230) flgK 3538178..3539695 (-) 1518 WP_015418331.1 flagellar hook-associated protein FlgK -
  QKW11_RS17260 (QKW11_17235) - 3539711..3540193 (-) 483 WP_003151394.1 flagellar protein FlgN -
  QKW11_RS17265 (QKW11_17240) flgM 3540208..3540474 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  QKW11_RS17270 (QKW11_17245) - 3540544..3540963 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  QKW11_RS17275 (QKW11_17250) comFC 3541037..3541726 (-) 690 WP_199776864.1 phosphoribosyltransferase family protein Machinery gene
  QKW11_RS17280 (QKW11_17255) - 3541732..3542016 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  QKW11_RS17285 (QKW11_17260) comFA 3542074..3543459 (-) 1386 WP_040238815.1 DEAD/DEAH box helicase Machinery gene
  QKW11_RS17290 (QKW11_17265) - 3543567..3544415 (-) 849 WP_015418336.1 DegV family protein -
  QKW11_RS17295 (QKW11_17270) degU 3544513..3545202 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QKW11_RS17300 (QKW11_17275) degS 3545279..3546442 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25235.79 Da        Isoelectric Point: 8.0779

>NTDB_id=828395 QKW11_RS17275 WP_199776864.1 3541037..3541726(-) (comFC) [Bacillus velezensis strain SF305]
MNCLLCDSSISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFSAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=828395 QKW11_RS17275 WP_199776864.1 3541037..3541726(-) (comFC) [Bacillus velezensis strain SF305]
CTGAATTGTTTATTGTGTGACTCATCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTTCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598