Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   QKW11_RS13535 Genome accession   NZ_CP124851
Coordinates   2773561..2774313 (-) Length   250 a.a.
NCBI ID   WP_256683600.1    Uniprot ID   -
Organism   Bacillus velezensis strain SF305     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2768561..2779313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QKW11_RS13510 (QKW11_13490) mreC 2768997..2769860 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  QKW11_RS13515 (QKW11_13495) mreB 2769891..2770904 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  QKW11_RS13520 (QKW11_13500) radC 2770996..2771691 (-) 696 WP_007408165.1 DNA repair protein RadC -
  QKW11_RS13525 (QKW11_13505) - 2771723..2772292 (-) 570 WP_012118105.1 nucleoside triphosphate pyrophosphatase -
  QKW11_RS13530 (QKW11_13510) - 2772433..2773434 (-) 1002 WP_032866593.1 SPOR domain-containing protein -
  QKW11_RS13535 (QKW11_13515) comC 2773561..2774313 (-) 753 WP_256683600.1 A24 family peptidase Machinery gene
  QKW11_RS13540 (QKW11_13520) - 2774453..2775745 (-) 1293 WP_256683601.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  QKW11_RS13545 (QKW11_13525) - 2775804..2778446 (-) 2643 WP_095352882.1 valine--tRNA ligase -
  QKW11_RS13550 (QKW11_13530) - 2778899..2779090 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27223.94 Da        Isoelectric Point: 9.4293

>NTDB_id=828384 QKW11_RS13535 WP_256683600.1 2773561..2774313(-) (comC) [Bacillus velezensis strain SF305]
MLLVLFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYIMQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=828384 QKW11_RS13535 WP_256683600.1 2773561..2774313(-) (comC) [Bacillus velezensis strain SF305]
GTGCTTTTGGTTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ACATTATGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTTACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTCTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGAGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58