Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QKW11_RS08765 Genome accession   NZ_CP124851
Coordinates   1827227..1827661 (+) Length   144 a.a.
NCBI ID   WP_061890616.1    Uniprot ID   -
Organism   Bacillus velezensis strain SF305     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1822227..1832661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QKW11_RS08760 (QKW11_08770) - 1825727..1826938 (-) 1212 WP_031379100.1 cytochrome P450 -
  QKW11_RS08765 (QKW11_08775) nucA/comI 1827227..1827661 (+) 435 WP_061890616.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QKW11_RS08770 (QKW11_08780) - 1827721..1828476 (+) 756 WP_061890617.1 YoaK family protein -
  QKW11_RS08775 (QKW11_08785) - 1828510..1828872 (-) 363 WP_007410383.1 hypothetical protein -
  QKW11_RS08780 (QKW11_08790) - 1829065..1830393 (-) 1329 WP_404841557.1 S8 family peptidase -
  QKW11_RS08785 (QKW11_08795) - 1830572..1830805 (+) 234 WP_015239897.1 hypothetical protein -
  QKW11_RS08790 (QKW11_08800) - 1831061..1831768 (+) 708 WP_007410381.1 poly-gamma-glutamate hydrolase family protein -
  QKW11_RS08795 (QKW11_08805) - 1831828..1832280 (+) 453 WP_014305039.1 OsmC family protein -
  QKW11_RS08800 (QKW11_08810) - 1832294..1832647 (-) 354 WP_007410379.1 multidrug efflux SMR transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15613.58 Da        Isoelectric Point: 7.8747

>NTDB_id=828366 QKW11_RS08765 WP_061890616.1 1827227..1827661(+) (nucA/comI) [Bacillus velezensis strain SF305]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADVRYVTPSDNRGAGSWVGNQMSRYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=828366 QKW11_RS08765 WP_061890616.1 1827227..1827661(+) (nucA/comI) [Bacillus velezensis strain SF305]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCAGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATGTCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCGTGGGTTGGAAATCAAATGAGCAGATATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.258

86.111

0.493