Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QKW11_RS07340 Genome accession   NZ_CP124851
Coordinates   1432296..1432580 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain SF305     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1427296..1437580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QKW11_RS07320 (QKW11_07330) - 1428541..1429449 (+) 909 WP_404841549.1 ketopantoate reductase family protein -
  QKW11_RS07325 (QKW11_07335) - 1429479..1430711 (-) 1233 WP_404841550.1 aminopeptidase -
  QKW11_RS07330 (QKW11_07340) - 1430812..1430946 (-) 135 WP_404841551.1 protein YkpC -
  QKW11_RS07335 (QKW11_07345) mreBH 1431018..1432025 (-) 1008 WP_032875216.1 cell shape-determining protein MreBH -
  QKW11_RS07340 (QKW11_07350) abrB 1432296..1432580 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QKW11_RS07345 (QKW11_07355) - 1432753..1434057 (+) 1305 WP_404841552.1 ATP-binding protein -
  QKW11_RS07350 (QKW11_07360) - 1434059..1434886 (+) 828 WP_404841553.1 gamma-glutamylcyclotransferase -
  QKW11_RS07355 (QKW11_07365) ktrC 1434927..1435592 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  QKW11_RS07360 (QKW11_07370) ade 1435741..1437474 (+) 1734 WP_256683782.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=828361 QKW11_RS07340 WP_003154557.1 1432296..1432580(+) (abrB) [Bacillus velezensis strain SF305]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=828361 QKW11_RS07340 WP_003154557.1 1432296..1432580(+) (abrB) [Bacillus velezensis strain SF305]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543