Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QLQ87_RS13100 Genome accession   NZ_CP124841
Coordinates   2840311..2841750 (-) Length   479 a.a.
NCBI ID   WP_099994508.1    Uniprot ID   A0AAX3VN16
Organism   Aeromonas salmonicida strain 57     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2835311..2846750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ87_RS13070 (QLQ87_13070) - 2835584..2836324 (+) 741 WP_125597208.1 KDGP aldolase family protein -
  QLQ87_RS13075 (QLQ87_13075) - 2836428..2838332 (+) 1905 WP_282683331.1 PRD domain-containing protein -
  QLQ87_RS13080 (QLQ87_13080) npr 2838351..2838623 (-) 273 WP_005314403.1 PTS phosphocarrier protein NPr -
  QLQ87_RS13085 (QLQ87_13085) rapZ 2838644..2839510 (-) 867 WP_005314405.1 RNase adapter RapZ -
  QLQ87_RS13090 (QLQ87_13090) ptsN 2839553..2839999 (-) 447 WP_005314406.1 PTS IIA-like nitrogen regulatory protein PtsN -
  QLQ87_RS13095 (QLQ87_13095) hpf 2840002..2840289 (-) 288 WP_005305957.1 ribosome hibernation promoting factor -
  QLQ87_RS13100 (QLQ87_13100) rpoN/rpoN1 2840311..2841750 (-) 1440 WP_099994508.1 RNA polymerase factor sigma-54 Machinery gene
  QLQ87_RS13105 (QLQ87_13105) lptB 2841816..2842541 (-) 726 WP_125597214.1 LPS export ABC transporter ATP-binding protein -
  QLQ87_RS13110 (QLQ87_13110) lptA 2842545..2843072 (-) 528 WP_005314414.1 lipopolysaccharide transport periplasmic protein LptA -
  QLQ87_RS13115 (QLQ87_13115) lptC 2843059..2843619 (-) 561 WP_005314417.1 LPS export ABC transporter periplasmic protein LptC -
  QLQ87_RS13120 (QLQ87_13120) kdsC 2843616..2844170 (-) 555 WP_282683332.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  QLQ87_RS13125 (QLQ87_13125) - 2844170..2845165 (-) 996 WP_034524103.1 KpsF/GutQ family sugar-phosphate isomerase -
  QLQ87_RS13130 (QLQ87_13130) mlaF 2845373..2846173 (+) 801 WP_011898278.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53877.82 Da        Isoelectric Point: 4.3484

>NTDB_id=828318 QLQ87_RS13100 WP_099994508.1 2840311..2841750(-) (rpoN/rpoN1) [Aeromonas salmonicida strain 57]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEVQETSPEEPVDDSQLDSSDAMAQDQMP
DELPVDTTWEDVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDLDAAIALAIIDAIDDSGYLTVSLED
IQAAVSSEDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYAPELPWLNEAREVIKEHMDLLGNRDYRTLARK
TKLKESDLKEVLDLIQQLEPRPGNGIIQSDSQYVIPDVTVVKKGNKWVVELNPDSAPRIRVNETYAAMARQARTSQDTQF
IRSHLQEAKWFIKSLESRNDTLLKVATCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=828318 QLQ87_RS13100 WP_099994508.1 2840311..2841750(-) (rpoN/rpoN1) [Aeromonas salmonicida strain 57]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGATAACAATCCTTTGCTTGAGCAAGAGGAGAATGAGG
TTCAGGAGACCAGCCCGGAAGAGCCCGTCGACGACAGTCAGCTCGACTCCAGCGATGCCATGGCCCAGGATCAGATGCCG
GATGAACTGCCGGTAGATACCACTTGGGAAGATGTCTATTCAGCCGGCACAGCCCAGAGCGCAGGCCCCATCCATGATGG
GGAGGACAGCGTCTATCAGGGGGAAACTACCGAGAACCTGCAGGACTATCTGCTGTGGCAGATGCGCCTCACCCCGTTCA
GTGATCTGGATGCCGCCATTGCGCTGGCCATCATAGATGCCATCGATGACTCCGGTTATCTGACCGTCTCTCTCGAAGAT
ATACAGGCGGCGGTGAGCAGCGAGGATGTCGAGGTGGAGCTCGACGAGGTCGAGGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCGCGCTCGGTGCAGGAGTGTCTGCTGATCCAGCTTGGCCAGTACGCTCCTGAACTGCCCT
GGCTCAATGAGGCCAGGGAGGTGATCAAGGAGCACATGGACTTGCTCGGCAACCGCGATTACCGCACCCTGGCGCGCAAG
ACCAAGCTCAAGGAGAGCGACCTCAAGGAGGTACTGGACCTTATCCAGCAACTGGAGCCCAGGCCGGGTAACGGCATCAT
ACAGAGTGACTCCCAGTACGTGATCCCGGATGTCACCGTCGTCAAGAAGGGCAACAAATGGGTCGTTGAACTCAACCCGG
ATTCTGCACCGCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGTCAGGCGCGTACTAGCCAGGATACCCAGTTC
ATTCGCTCCCACTTGCAAGAAGCTAAGTGGTTCATCAAGAGTCTGGAGAGTCGCAACGACACCCTGCTCAAGGTGGCGAC
CTGTATTGTCGAGCAACAACAGGGCTTTTTCGAGTATGGTGAAGAAGCCATGAAGCCCATGGTGCTCAACGATATCGCCG
AGGCGGTGGAGATGCATGAGTCGACCATTTCCAGGGTAACGACCCAGAAATACATGCATACCCCCCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGTCATGTGAACACAGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTGATCAA
GAAGCTGGTGACGGCGGAGAATCCCGCCAAGCCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.972

100

0.489