Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SGQ71_RS07440 Genome accession   NZ_CP138875
Coordinates   1558780..1559226 (-) Length   148 a.a.
NCBI ID   WP_075583651.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 11     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1553780..1564226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGQ71_RS07410 (SGQ71_07410) gcvPA 1554706..1556052 (-) 1347 WP_000019688.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SGQ71_RS07415 (SGQ71_07415) gcvT 1556072..1557163 (-) 1092 WP_000093355.1 glycine cleavage system aminomethyltransferase GcvT -
  SGQ71_RS07420 (SGQ71_07420) - 1557322..1557846 (-) 525 WP_001015122.1 shikimate kinase -
  SGQ71_RS07425 (SGQ71_07425) - 1557836..1557982 (-) 147 WP_001789879.1 hypothetical protein -
  SGQ71_RS07430 (SGQ71_07430) comGF 1558079..1558576 (-) 498 WP_029697681.1 competence type IV pilus minor pilin ComGF Machinery gene
  SGQ71_RS07435 (SGQ71_07435) comGE 1558494..1558793 (-) 300 WP_217654599.1 competence protein ComGE Machinery gene
  SGQ71_RS07440 (SGQ71_07440) comGD 1558780..1559226 (-) 447 WP_075583651.1 competence type IV pilus minor pilin ComGD Machinery gene
  SGQ71_RS07445 (SGQ71_07445) comGC 1559204..1559515 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  SGQ71_RS07450 (SGQ71_07450) comGB 1559529..1560599 (-) 1071 WP_000776403.1 competence type IV pilus assembly protein ComGB Machinery gene
  SGQ71_RS07455 (SGQ71_07455) comGA 1560571..1561545 (-) 975 WP_000697215.1 competence type IV pilus ATPase ComGA Machinery gene
  SGQ71_RS07460 (SGQ71_07460) - 1561597..1562220 (-) 624 WP_353059090.1 MBL fold metallo-hydrolase -
  SGQ71_RS07465 (SGQ71_07465) - 1562217..1562546 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SGQ71_RS07470 (SGQ71_07470) - 1562546..1563532 (-) 987 WP_000161315.1 ROK family glucokinase -
  SGQ71_RS07475 (SGQ71_07475) - 1563529..1563732 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17113.28 Da        Isoelectric Point: 10.3312

>NTDB_id=828248 SGQ71_RS07440 WP_075583651.1 1558780..1559226(-) (comGD) [Staphylococcus aureus strain 11]
MEKQLQIRKQSAFTMIEILVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=828248 SGQ71_RS07440 WP_075583651.1 1558780..1559226(-) (comGD) [Staphylococcus aureus strain 11]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATACTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGACGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAATCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986