Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QJS65_RS12785 Genome accession   NZ_CP124831
Coordinates   2451926..2452696 (-) Length   256 a.a.
NCBI ID   WP_282745272.1    Uniprot ID   -
Organism   Bacillus altitudinis strain Sample7_7     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2446926..2457696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJS65_RS12765 (QJS65_12765) - 2447019..2447840 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  QJS65_RS12770 (QJS65_12770) - 2447866..2448504 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  QJS65_RS12775 (QJS65_12775) glyS 2448671..2450716 (-) 2046 WP_282745271.1 glycine--tRNA ligase subunit beta -
  QJS65_RS12780 (QJS65_12780) glyQ 2450709..2451596 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  QJS65_RS12785 (QJS65_12785) recO 2451926..2452696 (-) 771 WP_282745272.1 DNA repair protein RecO Machinery gene
  QJS65_RS12790 (QJS65_12790) - 2452732..2452875 (-) 144 WP_008342408.1 YqzL family protein -
  QJS65_RS12795 (QJS65_12795) era 2453023..2453928 (-) 906 WP_007501305.1 GTPase Era -
  QJS65_RS12800 (QJS65_12800) - 2453921..2454319 (-) 399 WP_008342410.1 cytidine deaminase -
  QJS65_RS12805 (QJS65_12805) - 2454432..2454818 (-) 387 WP_282745273.1 diacylglycerol kinase family protein -
  QJS65_RS12810 (QJS65_12810) ybeY 2454796..2455275 (-) 480 WP_007501310.1 rRNA maturation RNase YbeY -
  QJS65_RS12815 (QJS65_12815) - 2455276..2457366 (-) 2091 WP_282747446.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29289.02 Da        Isoelectric Point: 8.4323

>NTDB_id=828220 QJS65_RS12785 WP_282745272.1 2451926..2452696(-) (recO) [Bacillus altitudinis strain Sample7_7]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMAKGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICKQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=828220 QJS65_RS12785 WP_282745272.1 2451926..2452696(-) (recO) [Bacillus altitudinis strain Sample7_7]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAAGGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGAACC
ATTCGGGAAGATTTATTTCTGACCGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCACTTCTCAATTAGAGATAACGGATTCATCTGTAAGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAAA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.391

100

0.754