Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QJS65_RS12255 Genome accession   NZ_CP124831
Coordinates   2360044..2361777 (-) Length   577 a.a.
NCBI ID   WP_282745252.1    Uniprot ID   -
Organism   Bacillus altitudinis strain Sample7_7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2355044..2366777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJS65_RS12240 (QJS65_12240) - 2355931..2357031 (-) 1101 WP_019743381.1 Rap family tetratricopeptide repeat protein -
  QJS65_RS12245 (QJS65_12245) spo0A 2357481..2358284 (-) 804 WP_008342226.1 sporulation transcription factor Spo0A Regulator
  QJS65_RS12250 (QJS65_12250) spoIVB 2358568..2359845 (-) 1278 WP_007501161.1 SpoIVB peptidase -
  QJS65_RS12255 (QJS65_12255) recN 2360044..2361777 (-) 1734 WP_282745252.1 DNA repair protein RecN Machinery gene
  QJS65_RS12260 (QJS65_12260) argR 2361812..2362261 (-) 450 WP_007501163.1 transcriptional regulator ArgR -
  QJS65_RS12265 (QJS65_12265) - 2362628..2363482 (-) 855 WP_007501164.1 TlyA family RNA methyltransferase -
  QJS65_RS12270 (QJS65_12270) dxs 2363479..2365380 (-) 1902 WP_007501165.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QJS65_RS12275 (QJS65_12275) - 2365532..2366422 (-) 891 WP_282745253.1 polyprenyl synthetase family protein -
  QJS65_RS12280 (QJS65_12280) - 2366412..2366672 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64574.46 Da        Isoelectric Point: 4.7116

>NTDB_id=828216 QJS65_RS12255 WP_282745252.1 2360044..2361777(-) (recN) [Bacillus altitudinis strain Sample7_7]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINQSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALS
QYQEAYDQYMKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLELGEDEKLQEERHQISNFEKIFSSLQNAYNALRNE
QGGLDWVGMASSELEQVSEINDDLKTLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAISRDALLEALNVSELRKKWAKKLAKHIQAELKDLYMEKSSFDTAFTI
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDTG
VSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRAKAGRTMTNVKPLSDDEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=828216 QJS65_RS12255 WP_282745252.1 2360044..2361777(-) (recN) [Bacillus altitudinis strain Sample7_7]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAGGAGTTAACGGTTTCGTTTGAAAAAGGACTCACAGTTCT
AACAGGGGAAACAGGTGCCGGAAAATCAATCATGATTGACGCTGTCTCACTTCTCGTAGGGGGAAGAGGATCATCCGAAT
TTGTCCGTTATGGCGAAAAAAAAGCAGAGCTGGAAGGTCTTTTTCTTGTACCAGCAGATCATCCTGTATTTGCCCTTTGC
GAGGAGCAAGGAATTGATGCATCTGATGAAATGATGATTCTTCGCCGTGATATCAATCAAAGCGGGAAAAGCATTTGCCG
CATTAATGGTAAGCTTGTCACCATCTCGCTTTTAAGAGAAGTTGGCCGTCTTTTGCTTGATATACATGGACAGCACGATA
ATCAGCTGTTAATGGAAGATGAAAATCATTTACATTTGCTTGATCAATTTGGAGCAGAAGAAATTGCACCTGCTCTCTCA
CAGTATCAAGAAGCGTATGATCAATATATGAAGACGGCGCAAAAACTCAAACAGCTGTCTGAAAATGAACAGGAAATGGT
TCACCGGTTAGACTTATTGCAATTTCAGCTGGAAGAGATTGAAGCGGCACAATTAGAGCTTGGGGAAGATGAGAAGCTTC
AAGAGGAACGTCATCAAATCAGCAATTTTGAAAAAATCTTTTCCTCGCTTCAAAACGCATACAATGCTCTGCGTAATGAG
CAGGGAGGACTTGATTGGGTTGGAATGGCTTCAAGTGAGCTTGAGCAAGTTTCTGAGATCAACGACGATCTGAAAACACT
CTCTGAGCAAGTGTCAAACTCCTATTATTTATTAGAAGATTCTACTTTTCAAATGCGAAGCATGCTTGATCAATTAGAAT
TTGACCCAGCCCGTCTTGATTTTATTGAGTCTAGGCTAAATGAGATGAAGCAGCTGAAGCGAAAGTACGGCACAACCGTT
GAGGAAATTTTAGAATATGCGGCTAAGATTGAAGAGGAGATAGACCAAATCCAAAATCGAGACAGCCATTTGCAGACACT
TAAAAACAAACTTGATGCGATAAGCCGGGATGCATTGCTTGAAGCGCTTAACGTGTCAGAGCTCCGTAAAAAATGGGCGA
AAAAACTGGCGAAGCACATTCAAGCTGAATTGAAGGATTTATATATGGAGAAGTCTTCTTTTGATACCGCTTTTACGATT
CGATATGCACCTTTTGGCAGTACGGACTGCCCGCTTTTAGATGGAAAACCCGTACAGCTTGGGAAAAATGGCATAGATCA
AGCGCAATTTGTCATTTCTACAAATCCGGGTGAACCGATGAAATCTTTGTCAAAAGTAGCATCTGGAGGAGAAATTTCAC
GTGTCATGCTGGCAGTGAAAAGTATTTTCTCAGCGAAACAAGAAGTGACGTCCATTATATTTGATGAAGTGGATACGGGT
GTTAGCGGCAGAGTCGCACAAGCCATTGCTGAAAAAATTTATAAAGTAGCAGCAGGCTCACAAGTACTCTGTATTACCCA
TCTGCCGCAAGTTGCAGCAATGGCTGATACACATCTTTTTATTTCTAAACGCGCTAAAGCTGGTAGAACAATGACGAACG
TCAAACCACTCAGTGATGATGAAAAAGTGAGTGAAATTGGCCGAATGATTGCTGGTGTAGAAGTCACTGAGCTCACAAAA
CAGCATGCAAAAGAATTACTGCACCAAGCAAATGATGTCAAAACGACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.737

100

0.757