Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QJS65_RS11245 Genome accession   NZ_CP124831
Coordinates   2172339..2172974 (+) Length   211 a.a.
NCBI ID   WP_017359733.1    Uniprot ID   A0A653S7S4
Organism   Bacillus altitudinis strain Sample7_7     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2167339..2177974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJS65_RS11210 (QJS65_11210) - 2167763..2168182 (+) 420 WP_282745197.1 Hsp20/alpha crystallin family protein -
  QJS65_RS11215 (QJS65_11215) - 2168303..2169655 (-) 1353 WP_282745199.1 IS1182 family transposase -
  QJS65_RS11220 (QJS65_11220) - 2169787..2170239 (-) 453 WP_017359729.1 YppG family protein -
  QJS65_RS11225 (QJS65_11225) - 2170348..2170728 (-) 381 WP_234710322.1 YppE family protein -
  QJS65_RS11230 (QJS65_11230) - 2170778..2171011 (-) 234 WP_282745200.1 DUF5446 family protein -
  QJS65_RS11235 (QJS65_11235) sspM 2171208..2171312 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  QJS65_RS11240 (QJS65_11240) - 2171336..2172292 (-) 957 WP_282745201.1 DUF2515 domain-containing protein -
  QJS65_RS11245 (QJS65_11245) recU 2172339..2172974 (+) 636 WP_017359733.1 Holliday junction resolvase RecU Machinery gene
  QJS65_RS11250 (QJS65_11250) - 2172994..2175687 (+) 2694 WP_100325376.1 PBP1A family penicillin-binding protein -
  QJS65_RS11255 (QJS65_11255) - 2175723..2176232 (-) 510 WP_019744018.1 YpoC family protein -
  QJS65_RS11260 (QJS65_11260) nth 2176229..2176891 (-) 663 WP_008344602.1 endonuclease III -
  QJS65_RS11265 (QJS65_11265) - 2176909..2177613 (-) 705 WP_007500879.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24314.60 Da        Isoelectric Point: 9.6582

>NTDB_id=828214 QJS65_RS11245 WP_017359733.1 2172339..2172974(+) (recU) [Bacillus altitudinis strain Sample7_7]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=828214 QJS65_RS11245 WP_017359733.1 2172339..2172974(+) (recU) [Bacillus altitudinis strain Sample7_7]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAACAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653S7S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697