Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QJS65_RS08930 Genome accession   NZ_CP124831
Coordinates   1769621..1770001 (+) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain Sample7_7     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1764621..1775001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJS65_RS08920 (QJS65_08920) - 1766344..1767252 (+) 909 WP_024719092.1 trypsin-like serine protease -
  QJS65_RS08925 (QJS65_08925) - 1767399..1769393 (+) 1995 WP_268418674.1 glycosyltransferase family 39 protein -
  QJS65_RS08930 (QJS65_08930) nucA/comI 1769621..1770001 (+) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QJS65_RS08935 (QJS65_08935) - 1770145..1770993 (+) 849 WP_076821648.1 STAS domain-containing protein -
  QJS65_RS08940 (QJS65_08940) - 1771026..1771568 (-) 543 WP_017359584.1 IseA DL-endopeptidase inhibitor family protein -
  QJS65_RS08945 (QJS65_08945) - 1771865..1772308 (+) 444 WP_144678736.1 hypothetical protein -
  QJS65_RS08950 (QJS65_08950) lexA 1772356..1772976 (-) 621 WP_007499350.1 transcriptional repressor LexA -
  QJS65_RS08955 (QJS65_08955) yneA 1773136..1773447 (+) 312 WP_007499348.1 cell division suppressor protein YneA -
  QJS65_RS08960 (QJS65_08960) - 1773465..1774112 (+) 648 WP_017359583.1 recombinase family protein -
  QJS65_RS08965 (QJS65_08965) - 1774182..1774412 (+) 231 WP_008343816.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=828213 QJS65_RS08930 WP_224559893.1 1769621..1770001(+) (nucA/comI) [Bacillus altitudinis strain Sample7_7]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=828213 QJS65_RS08930 WP_224559893.1 1769621..1770001(+) (nucA/comI) [Bacillus altitudinis strain Sample7_7]
ATGGGTGCATTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGAGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGCGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556