Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SGQ71_RS02000 Genome accession   NZ_CP138875
Coordinates   444978..445574 (+) Length   198 a.a.
NCBI ID   WP_000559159.1    Uniprot ID   Q99WC3
Organism   Staphylococcus aureus strain 11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 439978..450574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGQ71_RS01970 (SGQ71_01970) treR 440903..441631 (+) 729 WP_001118676.1 trehalose operon repressor -
  SGQ71_RS01980 (SGQ71_01980) - 442035..442136 (+) 102 WP_001790661.1 hypothetical protein -
  SGQ71_RS01985 (SGQ71_01985) - 442274..442798 (+) 525 WP_001167828.1 N-acetyltransferase -
  SGQ71_RS01990 (SGQ71_01990) dnaX 442867..444564 (+) 1698 WP_001109037.1 DNA polymerase III subunit gamma/tau -
  SGQ71_RS01995 (SGQ71_01995) - 444654..444971 (+) 318 WP_001213992.1 YbaB/EbfC family nucleoid-associated protein -
  SGQ71_RS02000 (SGQ71_02000) recR 444978..445574 (+) 597 WP_000559159.1 recombination mediator RecR Machinery gene
  SGQ71_RS02005 (SGQ71_02005) - 445779..445884 (+) 106 Protein_396 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22072.49 Da        Isoelectric Point: 4.7564

>NTDB_id=828202 SGQ71_RS02000 WP_000559159.1 444978..445574(+) (recR) [Staphylococcus aureus strain 11]
MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKSDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=828202 SGQ71_RS02000 WP_000559159.1 444978..445574(+) (recR) [Staphylococcus aureus strain 11]
ATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAAAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAGCAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATACAAAGGTTTATATCACGTTTT
ACATGGGTCTATTTCGCCTATGGATGGCATTGGACCAGAAGATATTAATATTCCTTCATTGATTGAACGCTTAAAAAGCG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAGGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAAC
TTTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q99WC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

77.273

100

0.773
  recR Streptococcus pneumoniae R6

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475