Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QJS65_RS00265 Genome accession   NZ_CP124831
Coordinates   50077..50367 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus altitudinis strain Sample7_7     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 45077..55367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJS65_RS00225 (QJS65_00225) - 45110..45439 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  QJS65_RS00230 (QJS65_00230) - 45452..45892 (+) 441 WP_035391564.1 YaaR family protein -
  QJS65_RS00235 (QJS65_00235) holB 45904..46893 (+) 990 WP_024719351.1 DNA polymerase III subunit delta' -
  QJS65_RS00240 (QJS65_00240) - 46896..47723 (+) 828 WP_282746309.1 stage 0 sporulation family protein -
  QJS65_RS00245 (QJS65_00245) yabA 47738..48091 (+) 354 WP_282746310.1 DNA replication initiation control protein YabA -
  QJS65_RS00250 (QJS65_00250) - 48147..48890 (+) 744 WP_017359328.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QJS65_RS00255 (QJS65_00255) - 48877..49176 (+) 300 WP_159145300.1 GIY-YIG nuclease family protein -
  QJS65_RS00260 (QJS65_00260) rsmI 49151..50032 (+) 882 WP_008341890.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QJS65_RS00265 (QJS65_00265) abrB 50077..50367 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QJS65_RS00270 (QJS65_00270) metG 50887..52887 (+) 2001 WP_282746312.1 methionine--tRNA ligase -
  QJS65_RS00275 (QJS65_00275) - 52969..53736 (+) 768 WP_017359325.1 TatD family hydrolase -
  QJS65_RS00280 (QJS65_00280) - 53981..55183 (+) 1203 WP_007496219.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=828184 QJS65_RS00265 WP_087975202.1 50077..50367(-) (abrB) [Bacillus altitudinis strain Sample7_7]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=828184 QJS65_RS00265 WP_087975202.1 50077..50367(-) (abrB) [Bacillus altitudinis strain Sample7_7]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAGCTTCGCCGTAC
GTTAGGAATCGCAGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938