Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   SGQ80_RS07145 Genome accession   NZ_CP138873
Coordinates   1483806..1484957 (-) Length   383 a.a.
NCBI ID   WP_000020346.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 174     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1478806..1489957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGQ80_RS07125 (SGQ80_07125) - 1478942..1479157 (+) 216 WP_000026308.1 hypothetical protein -
  SGQ80_RS07130 (SGQ80_07130) - 1479443..1480431 (+) 989 Protein_1398 transposase -
  SGQ80_RS07135 (SGQ80_07135) rny 1480685..1482244 (-) 1560 WP_217654632.1 ribonuclease Y -
  SGQ80_RS07140 (SGQ80_07140) recA 1482598..1483641 (-) 1044 WP_000368167.1 recombinase RecA -
  SGQ80_RS07145 (SGQ80_07145) cinA 1483806..1484957 (-) 1152 WP_000020346.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  SGQ80_RS07150 (SGQ80_07150) pgsA 1485182..1485760 (-) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SGQ80_RS07155 (SGQ80_07155) - 1485794..1486186 (-) 393 WP_000859443.1 RodZ family helix-turn-helix domain-containing protein -
  SGQ80_RS07160 (SGQ80_07160) - 1486205..1487032 (-) 828 WP_000214890.1 YmfK family protein -
  SGQ80_RS07165 (SGQ80_07165) - 1487137..1487841 (-) 705 WP_000646226.1 SDR family NAD(P)-dependent oxidoreductase -
  SGQ80_RS07170 (SGQ80_07170) - 1487841..1489127 (-) 1287 WP_000664770.1 pitrilysin family protein -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43237.52 Da        Isoelectric Point: 6.1914

>NTDB_id=828159 SGQ80_RS07145 WP_000020346.1 1483806..1484957(-) (cinA) [Staphylococcus aureus strain 174]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNFEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=828159 SGQ80_RS07145 WP_000020346.1 1483806..1484957(-) (cinA) [Staphylococcus aureus strain 174]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCGGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
TGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTCATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433