Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   R8559_RS06170 Genome accession   NZ_AP026926
Coordinates   1193670..1195337 (-) Length   555 a.a.
NCBI ID   WP_000923579.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700119     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1188670..1200337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8559_RS06145 (PC0116_12100) - 1189764..1190066 (-) 303 WP_000590570.1 PTS sugar transporter subunit IIB -
  R8559_RS06150 (PC0116_12110) - 1190104..1190580 (-) 477 Protein_1219 PTS sugar transporter subunit IIA -
  R8559_RS06155 (PC0116_12120) - 1190760..1190957 (+) 198 WP_000693364.1 hypothetical protein -
  R8559_RS06160 (PC0116_12130) lepA 1191038..1192861 (-) 1824 WP_001047212.1 translation elongation factor 4 -
  R8559_RS06165 (PC0116_12140) - 1192940..1193668 (-) 729 WP_000133339.1 metallophosphoesterase family protein -
  R8559_RS06170 (PC0116_12150) recN 1193670..1195337 (-) 1668 WP_000923579.1 DNA repair protein RecN Machinery gene
  R8559_RS06175 (PC0116_12160) - 1195344..1195775 (-) 432 WP_001034412.1 arginine repressor -
  R8559_RS06180 (PC0116_12170) - 1195768..1196583 (-) 816 WP_001041073.1 TlyA family RNA methyltransferase -
  R8559_RS06185 (PC0116_12180) - 1196576..1197451 (-) 876 WP_000743811.1 polyprenyl synthetase family protein -
  R8559_RS06190 (PC0116_12190) - 1197448..1197660 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  R8559_RS06195 (PC0116_12200) xseA 1197638..1198978 (-) 1341 WP_000417457.1 exodeoxyribonuclease VII large subunit -
  R8559_RS06200 (PC0116_12210) udk 1199106..1199744 (-) 639 WP_001181378.1 uridine kinase -
  R8559_RS06205 (PC0116_12220) - 1199852..1200154 (-) 303 WP_000985089.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62781.24 Da        Isoelectric Point: 4.7067

>NTDB_id=82802 R8559_RS06170 WP_000923579.1 1193670..1195337(-) (recN) [Streptococcus pneumoniae strain PZ900700119]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDSEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNKMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=82802 R8559_RS06170 WP_000923579.1 1193670..1195337(-) (recN) [Streptococcus pneumoniae strain PZ900700119]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGCCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCCATGAATGACATGGAAAGTGTCGAAGAGTATGATTCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTGATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATAAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44

Multiple sequence alignment