Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   QJR73_RS07195 Genome accession   NZ_CP124777
Coordinates   1534997..1535281 (-) Length   94 a.a.
NCBI ID   WP_282670292.1    Uniprot ID   -
Organism   Lachnoanaerobaculum gingivalis strain SHL-20230108WGSARO1-L360107582     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1529997..1540281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJR73_RS07185 (QJR73_07185) - 1530394..1532682 (-) 2289 WP_282670290.1 glycoside hydrolase family 2 protein -
  QJR73_RS07190 (QJR73_07190) - 1533131..1534306 (+) 1176 WP_282670291.1 ribose-phosphate pyrophosphokinase -
  QJR73_RS07195 (QJR73_07195) HI0659 1534997..1535281 (-) 285 WP_282670292.1 helix-turn-helix domain-containing protein Machinery gene
  QJR73_RS07200 (QJR73_07200) - 1535437..1537071 (-) 1635 WP_282670293.1 nucleoside kinase -
  QJR73_RS07205 (QJR73_07205) - 1537071..1538096 (-) 1026 WP_282670294.1 branched-chain amino acid aminotransferase -
  QJR73_RS07210 (QJR73_07210) prfA 1538106..1539176 (-) 1071 WP_034211643.1 peptide chain release factor 1 -
  QJR73_RS07215 (QJR73_07215) prmC 1539202..1540035 (-) 834 WP_282670295.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10236.90 Da        Isoelectric Point: 6.3372

>NTDB_id=828000 QJR73_RS07195 WP_282670292.1 1534997..1535281(-) (HI0659) [Lachnoanaerobaculum gingivalis strain SHL-20230108WGSARO1-L360107582]
MNSAIGQNALEFIDSLLTPEEISESDLRVALIGELTRARQERGLSQKKLEELSGVKQPVIARMEKGQTSPQLDTILKVLA
PLGKTLAIVPLNSK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=828000 QJR73_RS07195 WP_282670292.1 1534997..1535281(-) (HI0659) [Lachnoanaerobaculum gingivalis strain SHL-20230108WGSARO1-L360107582]
ATGAATAGTGCGATTGGGCAGAATGCTTTAGAATTTATAGATTCTCTTTTAACACCTGAAGAAATATCGGAAAGTGACTT
AAGAGTTGCTTTGATAGGAGAACTTACTAGAGCCAGACAAGAAAGGGGATTGAGCCAAAAGAAATTAGAAGAATTAAGTG
GTGTAAAACAGCCTGTAATAGCAAGGATGGAAAAAGGACAAACAAGTCCACAACTTGATACGATATTAAAAGTCTTGGCA
CCATTGGGAAAAACACTTGCGATTGTACCATTAAACAGCAAATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

65.217

97.872

0.638