Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   P8770_RS06200 Genome accession   NZ_CP124737
Coordinates   1190929..1192302 (-) Length   457 a.a.
NCBI ID   WP_004562734.1    Uniprot ID   A0A806TIP1
Organism   Limosilactobacillus fermentum strain EFEL6800     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1185929..1197302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8770_RS06185 (P8770_06185) - 1187559..1188128 (-) 570 WP_282347696.1 TIGR01440 family protein -
  P8770_RS06190 (P8770_06190) gltX 1188196..1189692 (-) 1497 WP_004563336.1 glutamate--tRNA ligase -
  P8770_RS06195 (P8770_06195) - 1189763..1190896 (-) 1134 WP_023465748.1 PIN/TRAM domain-containing protein -
  P8770_RS06200 (P8770_06200) radA 1190929..1192302 (-) 1374 WP_004562734.1 DNA repair protein RadA Machinery gene
  P8770_RS06205 (P8770_06205) - 1192315..1192854 (-) 540 WP_004563338.1 dUTP diphosphatase -
  P8770_RS06210 (P8770_06210) - 1193054..1193365 (+) 312 WP_004562732.1 GNAT family N-acetyltransferase -
  P8770_RS06215 (P8770_06215) rpiA 1193377..1194063 (+) 687 WP_004563339.1 ribose-5-phosphate isomerase RpiA -
  P8770_RS06220 (P8770_06220) - 1194091..1194705 (+) 615 WP_004563340.1 sugar O-acetyltransferase -
  P8770_RS06225 (P8770_06225) - 1194769..1196106 (+) 1338 WP_004562729.1 C1 family peptidase -
  P8770_RS06230 (P8770_06230) - 1196423..1197298 (-) 876 WP_023465750.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49381.79 Da        Isoelectric Point: 8.7358

>NTDB_id=827814 P8770_RS06200 WP_004562734.1 1190929..1192302(-) (radA) [Limosilactobacillus fermentum strain EFEL6800]
MAKAKTHFVCQNCGYNSPRYLGRCPNCGQWSTLVEEVEQASTPAAKNATATLTGIVARPQRIQEIDTKKTPRVKTRLNEL
NRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSGQLSVEHHKVLYVSGEESASQIKLRAQRLDVSGEDFYIYPETNMEAIR
ATIDSIQPEFVIIDSVQTMQAADVTSAIGSVSQIRAVTAQLMQIAKGQNITVFVVGHVTKGGVLAGPKILEHMVDTVLYF
EGDLHHTYRILRSVKNRFGSTNELGIFEMNTRGLTEVANPSEIFLEERLKDATGSAVVVSLEGTRPILVEIQALITPTVF
GNAQRTATGLNRNRVSLIMAVLEKRANLLLQNQDAYLKAAGGVKLDEPAIDLAIAVAIASSYRDKGTRPTDAFVGEVGLT
GEIRRVSRIEQRVAEAAKLGFKRILVPKNNLAGWNPPQDIEVVGVTTLGEALKIALG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=827814 P8770_RS06200 WP_004562734.1 1190929..1192302(-) (radA) [Limosilactobacillus fermentum strain EFEL6800]
ATGGCAAAAGCAAAAACACACTTTGTCTGCCAAAACTGCGGTTACAATTCACCGCGCTATTTAGGGCGGTGTCCCAATTG
TGGCCAGTGGAGTACCTTAGTTGAAGAAGTCGAGCAGGCAAGTACCCCGGCGGCTAAAAACGCTACGGCAACCTTAACCG
GGATTGTGGCCCGGCCCCAGCGAATCCAAGAAATTGACACCAAAAAAACGCCCCGGGTTAAGACCCGCTTAAATGAGTTA
AACCGGGTGCTAGGTGGCGGAATTGTACCCGGCTCGTTGGTCTTAATTGGTGGGGATCCCGGGATCGGAAAGTCCACCCT
GCTCTTACAAGTGTCGGGGCAACTGAGCGTGGAACACCACAAGGTTCTTTACGTTTCCGGGGAAGAATCGGCCTCCCAAA
TTAAATTGCGGGCCCAACGCTTAGACGTTTCCGGCGAGGACTTTTATATCTACCCGGAAACCAACATGGAAGCCATCCGG
GCGACGATTGATTCCATTCAGCCCGAGTTTGTAATCATTGACTCGGTTCAGACGATGCAGGCGGCCGACGTGACCTCGGC
GATTGGGTCGGTCTCCCAAATCCGGGCGGTCACCGCCCAGTTGATGCAGATTGCCAAGGGGCAAAACATCACGGTCTTCG
TGGTTGGTCACGTCACCAAGGGTGGGGTCTTAGCTGGGCCCAAGATCTTGGAACACATGGTTGACACGGTGCTGTACTTT
GAAGGGGACCTCCACCACACCTACCGGATTTTACGGTCGGTCAAAAACCGGTTTGGGTCCACCAATGAGTTAGGGATCTT
CGAAATGAATACCCGCGGTTTGACCGAGGTCGCAAACCCCTCGGAAATATTTTTGGAAGAGCGGCTTAAGGATGCCACCG
GGTCGGCCGTAGTCGTATCCCTGGAGGGAACCCGACCGATCCTGGTTGAAATCCAGGCCTTGATCACGCCAACCGTCTTT
GGAAACGCCCAAAGAACGGCGACGGGTTTAAACCGCAACCGGGTTTCCTTGATCATGGCGGTCCTAGAAAAACGGGCGAA
CCTGCTCTTACAAAACCAGGATGCCTACTTGAAGGCGGCCGGGGGCGTTAAGTTAGACGAGCCGGCCATCGACCTTGCGA
TCGCGGTGGCAATTGCTTCTTCTTACCGGGATAAGGGGACCCGGCCGACCGACGCCTTCGTCGGTGAAGTTGGCTTAACC
GGGGAGATCCGTCGGGTGAGCCGAATTGAACAGCGGGTGGCCGAAGCCGCTAAACTAGGCTTTAAGCGGATTTTAGTGCC
CAAAAACAATTTAGCGGGTTGGAACCCGCCGCAAGACATCGAAGTCGTGGGGGTAACGACCCTTGGCGAAGCACTTAAAA
TTGCCCTTGGATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)

AAA domain (AAA_25)

(64-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A806TIP1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

68.212

99.125

0.676
  radA Streptococcus mitis NCTC 12261

67.991

99.125

0.674
  radA Streptococcus pneumoniae Rx1

67.991

99.125

0.674
  radA Streptococcus pneumoniae D39

67.991

99.125

0.674
  radA Streptococcus pneumoniae R6

67.991

99.125

0.674
  radA Streptococcus pneumoniae TIGR4

67.991

99.125

0.674
  radA Bacillus subtilis subsp. subtilis str. 168

63.676

100

0.637