Detailed information NTG0827795

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PMI20_RS29090
• Genome accession: NZ_CP124732
• Coordinates: 6483877..6485205 (+)
• Length: 442 a.a.
• NCBI ID: WP_007924722.1
• Uniprot ID: -
• Organism: Pseudomonas sp. GM17
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6478877..6490205

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PMI20_RS29070 (PMI20_029070)	pgeF	6480368..6481093 (-)	726	WP_007924718.1	peptidoglycan editing factor PgeF	-
PMI20_RS29075 (PMI20_029075)	rluD	6481090..6482052 (-)	963	WP_007924719.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PMI20_RS29080 (PMI20_029080)	-	6482205..6483227 (+)	1023	WP_007924720.1	outer membrane protein assembly factor BamD	-
PMI20_RS29085 (PMI20_029085)	-	6483362..6483595 (+)	234	WP_007924721.1	PP0621 family protein	-
PMI20_RS29090 (PMI20_029090)	pilR	6483877..6485205 (+)	1329	WP_007924722.1	sigma-54 dependent transcriptional regulator	Regulator
PMI20_RS29095 (PMI20_029095)	thiO	6485202..6486302 (-)	1101	WP_007924723.1	glycine oxidase ThiO	-
PMI20_RS29100 (PMI20_029100)	-	6486357..6486758 (-)	402	WP_007924724.1	type IV pilin protein	-
PMI20_RS29105 (PMI20_029105)	-	6486772..6489843 (-)	3072	WP_007924725.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48916.45 Da
• Isoelectric Point: 9.2339

>NTDB_id=827795 PMI20_RS29090 WP_007924722.1 6483877..6485205(+) (pilR) [Pseudomonas sp. GM17]
MSPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQCRQLRMPLA
ILSTCARQETAIHALKAGAIDFLSKPVALARLRELLNGALPGSTPPPPATGPLLGDSAAMHKLRGQIGKLARSQASVYIS
GESGSGKELVARAIHDQGPRASHAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAIRCVGEQQEVQVDVRILCATHKALQAEVHAGRFRQDLYYRLNVIELPVPPLRARKADIEPLTTAILE
RLAQGNGQQLTRLQPSALLALQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTPNGAHPAITPGPAQVINLEKHLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=827795 PMI20_RS29090 WP_007924722.1 6483877..6485205(+) (pilR) [Pseudomonas sp. GM17]
ATGAGCCCACGACAAAAAGTCTTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAACGCCATACCCGCAGCGCCCGCACCCTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAGGCTTCGACCTGTGCCTGA
GCGACCTGCATTTACCCGACGGCACGGGGCTGGAGTTACTCGAGCATATCCAGTGCCGCCAGCTGCGAATGCCGCTGGCA
ATACTCAGCACCTGCGCCCGCCAGGAAACCGCGATCCACGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCGCGCTTGCGCGAGCTGCTGAATGGTGCCCTGCCCGGATCGACACCCCCGCCCCCTGCCACCGGACCATTGC
TCGGCGATTCGGCCGCCATGCACAAGCTGCGCGGACAAATCGGCAAACTGGCCCGGAGCCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGAAGCGGCAAGGAACTGGTCGCCCGCGCAATCCACGACCAGGGTCCTCGAGCCAGCCACGCCTTCGTGCC
GGTCAATTGCGGAGCCATCCCACCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCTA
TCGAAGACAAGCCCGGCCTGTTCCAGGCGGCGCACGGCGGCACGCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGCGCACTGCAGGAGAAGGCGATACGTTGCGTCGGCGAACAGCAGGAAGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACTCACAAGGCGCTGCAGGCGGAAGTGCATGCCGGGCGCTTTCGCCAGGATCTCTACTACCGCC
TGAACGTGATCGAGTTGCCGGTGCCACCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGACCACCGCCATCCTCGAG
CGCCTGGCGCAGGGTAACGGCCAACAACTGACACGGCTTCAGCCAAGCGCGTTGCTGGCACTCCAGGGCTACGACTTTCC
CGGTAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCGGATCGAAGCACGTGACC
TGCGCCTGACGCCAAACGGCGCCCACCCAGCCATCACGCCCGGCCCGGCACAGGTGATCAATCTTGAGAAACATCTGCAA
GAGGTCGAGCGCCGGCTGATCCTCCAGGCTCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACCGGTTGAAGAAACTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.043	100	0.672
pilR	Acinetobacter baumannii strain A118	43.818	100	0.457