Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SGW63_RS12635 Genome accession   NZ_CP138670
Coordinates   2506506..2507246 (+) Length   246 a.a.
NCBI ID   WP_000216870.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70500     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2501506..2512246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW63_RS12610 yhaM 2501924..2502865 (+) 942 WP_001244180.1 3'-5' exoribonuclease YhaM -
  SGW63_RS12615 - 2502986..2503948 (-) 963 WP_000782121.1 foldase protein PrsA -
  SGW63_RS12620 - 2504153..2504710 (-) 558 WP_000477963.1 DUF3267 domain-containing protein -
  SGW63_RS12625 - 2505443..2505808 (-) 366 WP_000648118.1 YtxH domain-containing protein -
  SGW63_RS12630 - 2505950..2506372 (-) 423 WP_000004981.1 HIT family protein -
  SGW63_RS12635 pptA 2506506..2507246 (+) 741 WP_000216870.1 ABC transporter ATP-binding protein Regulator
  SGW63_RS12640 - 2507239..2508462 (+) 1224 WP_001245768.1 ABC transporter permease -
  SGW63_RS12645 traP 2508586..2509089 (-) 504 WP_000737976.1 signal transduction protein TRAP -
  SGW63_RS12650 - 2509252..2509362 (+) 111 WP_001790154.1 hypothetical protein -
  SGW63_RS12655 hemE 2509352..2510389 (+) 1038 WP_000233526.1 uroporphyrinogen decarboxylase -
  SGW63_RS12660 hemH 2510447..2511370 (+) 924 WP_000162885.1 ferrochelatase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27658.96 Da        Isoelectric Point: 4.6672

>NTDB_id=827656 SGW63_RS12635 WP_000216870.1 2506506..2507246(+) (pptA) [Staphylococcus aureus strain DA70500]
MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKAMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHNQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=827656 SGW63_RS12635 WP_000216870.1 2506506..2507246(+) (pptA) [Staphylococcus aureus strain DA70500]
ATGACAGTTAAAGTAGAACAGCTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATTGTTGGACTTATTGGCCTTAATGGCGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGATATCAACATTAATGATGACATAGAGGCTTATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATTTATGAAGAACTCACATTAGAGGAACACATTGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAGCGATGAATCGAGCAATGCCATTATTAAAGACATTCCGTTTAGAAAATGAATTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGCCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCA
TTCCTTGGCCTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCAACAGCTGAACGTTACTGTGATCGTTTTATCATACTTGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACTGGCTTACATAATCAAACATTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

56.904

97.154

0.553
  pptA Streptococcus thermophilus LMD-9

55.649

97.154

0.541