Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   QJ519_RS01590 Genome accession   NZ_CP124678
Coordinates   340098..340916 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 2022CK-00772     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335098..345916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJ519_RS01555 (QJ519_01560) - 335681..335810 (-) 130 Protein_297 hypothetical protein -
  QJ519_RS01560 (QJ519_01565) rpoZ 335849..336127 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  QJ519_RS01565 (QJ519_01570) gmk 336200..336829 (-) 630 WP_000015937.1 guanylate kinase -
  QJ519_RS01570 (QJ519_01575) ispH 336952..337902 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QJ519_RS01575 (QJ519_01580) fimU 338072..338545 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  QJ519_RS01580 (QJ519_01585) pilV 338539..339099 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  QJ519_RS01585 (QJ519_01590) pilW 339100..340101 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  QJ519_RS01590 (QJ519_01595) pilX 340098..340916 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  QJ519_RS01595 (QJ519_01600) pilY1 340928..344782 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  QJ519_RS01600 (QJ519_01605) pilY2 344795..345277 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  QJ519_RS01605 (QJ519_01610) pilE 345274..345699 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=827650 QJ519_RS01590 WP_000149374.1 340098..340916(+) (pilX) [Acinetobacter baumannii strain 2022CK-00772]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=827650 QJ519_RS01590 WP_000149374.1 340098..340916(+) (pilX) [Acinetobacter baumannii strain 2022CK-00772]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993