Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   SGW63_RS10960 Genome accession   NZ_CP138670
Coordinates   2223547..2224017 (-) Length   156 a.a.
NCBI ID   WP_000164421.1    Uniprot ID   P65329
Organism   Staphylococcus aureus strain DA70500     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2218547..2229017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW63_RS10930 - 2218586..2218999 (+) 414 WP_001123303.1 thiol-disulfide oxidoreductase DCC family protein -
  SGW63_RS10935 - 2219199..2219642 (+) 444 WP_000070866.1 Dps family protein -
  SGW63_RS10940 deoD 2219763..2220473 (-) 711 WP_000160304.1 purine-nucleoside phosphorylase -
  SGW63_RS10945 deoC 2220788..2221450 (+) 663 WP_001083324.1 deoxyribose-phosphate aldolase -
  SGW63_RS10950 - 2221730..2223031 (+) 1302 WP_001242311.1 pyrimidine-nucleoside phosphorylase -
  SGW63_RS10955 - 2223045..2223395 (+) 351 WP_001024035.1 membrane protein -
  SGW63_RS10960 luxS 2223547..2224017 (-) 471 WP_000164421.1 S-ribosylhomocysteine lyase Regulator
  SGW63_RS10965 - 2224328..2225512 (+) 1185 WP_001291497.1 M20 family metallopeptidase -
  SGW63_RS10970 - 2225512..2226705 (+) 1194 WP_000183726.1 hypothetical protein -
  SGW63_RS10975 - 2227104..2227775 (+) 672 WP_000120550.1 DUF2750 domain-containing protein -
  SGW63_RS10980 coaW 2227905..2228708 (-) 804 WP_000862727.1 type II pantothenate kinase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17513.76 Da        Isoelectric Point: 5.4567

>NTDB_id=827644 SGW63_RS10960 WP_000164421.1 2223547..2224017(-) (luxS) [Staphylococcus aureus strain DA70500]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=827644 SGW63_RS10960 WP_000164421.1 2223547..2224017(-) (luxS) [Staphylococcus aureus strain DA70500]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAAGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCCG
GACTACATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTTGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCTGCTTGTAATGAAGTACAATGTGGCTGGGCAGCAAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65329

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404