Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   QJ960_RS25000 Genome accession   NZ_CP124664
Coordinates   5363900..5364457 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain 2021CK-01256     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5358900..5369457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJ960_RS24980 (QJ960_24980) pilR 5360176..5361513 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  QJ960_RS24985 (QJ960_24985) thiO 5361559..5362653 (-) 1095 WP_003119424.1 glycine oxidase ThiO -
  QJ960_RS24990 (QJ960_24990) - 5362788..5363297 (+) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  QJ960_RS24995 (QJ960_24995) - 5363403..5363909 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  QJ960_RS25000 (QJ960_25000) pilV 5363900..5364457 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  QJ960_RS25005 (QJ960_25005) pilW 5364454..5365278 (+) 825 WP_034048286.1 type 4a pilus minor pilin PilW -
  QJ960_RS25010 (QJ960_25010) pilX 5365275..5365862 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  QJ960_RS25015 (QJ960_25015) pilY1 5365874..5369365 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=827426 QJ960_RS25000 WP_003094697.1 5363900..5364457(+) (pilV) [Pseudomonas aeruginosa strain 2021CK-01256]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=827426 QJ960_RS25000 WP_003094697.1 5363900..5364457(+) (pilV) [Pseudomonas aeruginosa strain 2021CK-01256]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAATGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978