Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   SGW58_RS03920 Genome accession   NZ_CP138666
Coordinates   779463..780614 (-) Length   383 a.a.
NCBI ID   WP_000020354.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70300     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 774463..785614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW58_RS03900 - 774860..775657 (-) 798 WP_001222103.1 TIGR00282 family metallophosphoesterase -
  SGW58_RS03905 - 775831..776046 (+) 216 WP_000026308.1 hypothetical protein -
  SGW58_RS03910 rny 776342..777901 (-) 1560 WP_001050913.1 ribonuclease Y -
  SGW58_RS03915 recA 778255..779298 (-) 1044 WP_000368166.1 recombinase RecA Machinery gene
  SGW58_RS03920 cinA 779463..780614 (-) 1152 WP_000020354.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  SGW58_RS03925 pgsA 780839..781417 (-) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SGW58_RS03930 - 781451..781843 (-) 393 WP_000859443.1 RodZ family helix-turn-helix domain-containing protein -
  SGW58_RS03935 - 781862..782689 (-) 828 WP_000214890.1 YmfK family protein -
  SGW58_RS03940 - 782794..783498 (-) 705 WP_000646219.1 SDR family NAD(P)-dependent oxidoreductase -
  SGW58_RS03945 - 783498..784784 (-) 1287 WP_000664777.1 pitrilysin family protein -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43167.38 Da        Isoelectric Point: 5.7673

>NTDB_id=827352 SGW58_RS03920 WP_000020354.1 779463..780614(-) (cinA) [Staphylococcus aureus strain DA70300]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETVLIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKINEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNLEFKTEQFKMSESRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=827352 SGW58_RS03920 WP_000020354.1 779463..780614(-) (cinA) [Staphylococcus aureus strain DA70300]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAATGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTTC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTA
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACACTCTGAACTATTAAGATTTGCTGGAATAGGTGA
ATCTAAAGTAGAAACAGTATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCAGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAGCAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTAATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTATTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAGCAATTTAAAATGTCTGAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTTATAA
GGTTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433