Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   P7I93_RS27270 Genome accession   NZ_CP124658
Coordinates   5701735..5702292 (+) Length   185 a.a.
NCBI ID   WP_003110422.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2022CK-00068     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5696735..5707292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I93_RS27250 (P7I93_27250) pilR 5698011..5699348 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  P7I93_RS27255 (P7I93_27255) thiO 5699394..5700488 (-) 1095 WP_023092933.1 glycine oxidase ThiO -
  P7I93_RS27260 (P7I93_27260) - 5700623..5701132 (+) 510 WP_023092934.1 Tfp pilus assembly protein FimT/FimU -
  P7I93_RS27265 (P7I93_27265) - 5701238..5701744 (+) 507 WP_003110423.1 Tfp pilus assembly protein FimT/FimU -
  P7I93_RS27270 (P7I93_27270) pilV 5701735..5702292 (+) 558 WP_003110422.1 type 4a pilus minor pilin PilV Machinery gene
  P7I93_RS27275 (P7I93_27275) pilW 5702289..5703113 (+) 825 WP_023092935.1 type 4a pilus minor pilin PilW -
  P7I93_RS27280 (P7I93_27280) pilX 5703110..5703697 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  P7I93_RS27285 (P7I93_27285) pilY1 5703709..5707194 (+) 3486 WP_003134937.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20072.23 Da        Isoelectric Point: 7.9204

>NTDB_id=827294 P7I93_RS27270 WP_003110422.1 5701735..5702292(+) (pilV) [Pseudomonas aeruginosa strain 2022CK-00068]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLMSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=827294 P7I93_RS27270 WP_003110422.1 5701735..5702292(+) (pilV) [Pseudomonas aeruginosa strain 2022CK-00068]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGATGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.378

100

0.984