Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   P7I92_RS24535 Genome accession   NZ_CP124654
Coordinates   5261098..5261655 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2021CK-01851     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5256098..5266655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I92_RS24515 (P7I92_24515) pilR 5257374..5258711 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  P7I92_RS24520 (P7I92_24520) thiO 5258757..5259851 (-) 1095 WP_003134931.1 glycine oxidase ThiO -
  P7I92_RS24525 (P7I92_24525) - 5259986..5260495 (+) 510 WP_023088572.1 Tfp pilus assembly protein FimT/FimU -
  P7I92_RS24530 (P7I92_24530) - 5260601..5261107 (+) 507 WP_003110423.1 Tfp pilus assembly protein FimT/FimU -
  P7I92_RS24535 (P7I92_24535) pilV 5261098..5261655 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  P7I92_RS24540 (P7I92_24540) pilW 5261652..5262476 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  P7I92_RS24545 (P7I92_24545) pilX 5262473..5263060 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  P7I92_RS24550 (P7I92_24550) pilY1 5263072..5266563 (+) 3492 WP_023111845.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=827191 P7I92_RS24535 WP_003119423.1 5261098..5261655(+) (pilV) [Pseudomonas aeruginosa strain 2021CK-01851]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=827191 P7I92_RS24535 WP_003119423.1 5261098..5261655(+) (pilV) [Pseudomonas aeruginosa strain 2021CK-01851]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995