Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   P8730_RS00235 Genome accession   NZ_CP138577
Coordinates   50729..51754 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain strain KUD2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 45729..56754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8730_RS00210 (P8730_00210) - 45919..46236 (-) 318 WP_003097288.1 tetratricopeptide repeat protein -
  P8730_RS00215 (P8730_00215) trkA 46384..47757 (-) 1374 WP_003111375.1 Trk system potassium transporter TrkA -
  P8730_RS00220 (P8730_00220) rsmB 47784..49088 (-) 1305 WP_009316075.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  P8730_RS00225 (P8730_00225) fmt 49085..50029 (-) 945 WP_023095008.1 methionyl-tRNA formyltransferase -
  P8730_RS00230 (P8730_00230) def 50084..50590 (-) 507 WP_003097293.1 peptide deformylase -
  P8730_RS00235 (P8730_00235) tsaP 50729..51754 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  P8730_RS00240 (P8730_00240) dprA 51889..52977 (+) 1089 WP_022580757.1 DNA-processing protein DprA Machinery gene
  P8730_RS00245 (P8730_00245) - 53018..53575 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  P8730_RS00250 (P8730_00250) - 53585..54562 (-) 978 WP_003097303.1 NADPH:quinone reductase -
  P8730_RS00255 (P8730_00255) hemF 54753..55670 (+) 918 WP_034064536.1 oxygen-dependent coproporphyrinogen oxidase -
  P8730_RS00260 (P8730_00260) aroE 55728..56552 (+) 825 WP_003097314.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=826862 P8730_RS00235 WP_003097294.1 50729..51754(+) (tsaP) [Pseudomonas aeruginosa strain strain KUD2]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=826862 P8730_RS00235 WP_003097294.1 50729..51754(+) (tsaP) [Pseudomonas aeruginosa strain strain KUD2]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGCGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTAGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGTGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393