Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QF117_RS18575 Genome accession   NZ_CP124614
Coordinates   2782039..2782557 (-) Length   172 a.a.
NCBI ID   WP_282387527.1    Uniprot ID   -
Organism   Vibrio sp. YMD68     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2777039..2787557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF117_RS18550 (QF117_18550) rimM 2777071..2777625 (-) 555 WP_282387525.1 ribosome maturation factor RimM -
  QF117_RS18555 (QF117_18555) rpsP 2777658..2777906 (-) 249 WP_017036646.1 30S ribosomal protein S16 -
  QF117_RS18560 (QF117_18560) ffh 2778135..2779541 (-) 1407 WP_017036645.1 signal recognition particle protein -
  QF117_RS18565 (QF117_18565) - 2779733..2780527 (+) 795 WP_282387526.1 inner membrane protein YpjD -
  QF117_RS18570 (QF117_18570) - 2780646..2781914 (+) 1269 WP_026026501.1 CNNM domain-containing protein -
  QF117_RS18575 (QF117_18575) luxS 2782039..2782557 (-) 519 WP_282387527.1 S-ribosylhomocysteine lyase Regulator
  QF117_RS18580 (QF117_18580) gshA 2782663..2784228 (-) 1566 WP_282387528.1 glutamate--cysteine ligase -
  QF117_RS18585 (QF117_18585) - 2784346..2787204 (-) 2859 WP_282387529.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18901.70 Da        Isoelectric Point: 4.6975

>NTDB_id=826784 QF117_RS18575 WP_282387527.1 2782039..2782557(-) (luxS) [Vibrio sp. YMD68]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEEGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEDAVAKAWLAAMEDVLKVTDQNKIPELNEYQCGTAAMHSLSQAQDIAKNIIAAGILVNKNDELA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=826784 QF117_RS18575 WP_282387527.1 2782039..2782557(-) (luxS) [Vibrio sp. YMD68]
ATGCCGTTATTAGATAGTTTTACCGTCGACCACACTCGCATGAATGCACCAGCAGTGCGCGTTGCAAAAACAATGCAGAC
GCCTAAAGGCGATACGATTACGGTGTTTGATCTACGTTTTACTGCACCCAATAAAGATATTCTTTCAGAAGAAGGCATCC
ACACACTAGAGCACCTTTACGCGGGTTTCATGCGTAATCACTTGAATGGTGATTCTGTCGAGATTATTGACATTTCTCCA
ATGGGGTGTCGTACGGGCTTTTACATGAGCCTGATTGGTACACCGAGTGAAGATGCCGTTGCCAAGGCTTGGTTAGCTGC
GATGGAAGATGTATTGAAGGTCACTGACCAGAACAAGATTCCTGAGCTAAATGAATACCAATGTGGTACCGCGGCAATGC
ATTCACTATCTCAAGCGCAAGACATTGCAAAAAACATCATTGCAGCCGGTATCTTAGTCAATAAAAATGATGAACTAGCG
TTGCCAGAAGCGATGTTAAAAGAGCTGAAAGTAGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86