Detailed information NTG0826779

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: QF117_RS18275
• Genome accession: NZ_CP124614
• Coordinates: 2706810..2710196 (+)
• Length: 1128 a.a.
• NCBI ID: WP_282387438.1
• Uniprot ID: -
• Organism: Vibrio sp. YMD68
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2701810..2715196

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QF117_RS18255 (QF117_18255)	erpA	2702260..2702601 (-)	342	WP_017041699.1	iron-sulfur cluster insertion protein ErpA	-
QF117_RS18260 (QF117_18260)	hemL	2702883..2704175 (+)	1293	WP_282387432.1	glutamate-1-semialdehyde 2,1-aminomutase	-
QF117_RS18265 (QF117_18265)	-	2704436..2705521 (+)	1086	WP_282387435.1	AI-2E family transporter	-
QF117_RS18270 (QF117_18270)	rsmC	2705601..2706626 (+)	1026	WP_282387436.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
QF117_RS18275 (QF117_18275)	chiS	2706810..2710196 (+)	3387	WP_282387438.1	ATP-binding protein	Regulator
QF117_RS18280 (QF117_18280)	-	2711145..2712827 (+)	1683	WP_282387440.1	ABC transporter substrate-binding protein	-
QF117_RS18285 (QF117_18285)	-	2712998..2713984 (+)	987	WP_017036701.1	ABC transporter permease	-
QF117_RS18290 (QF117_18290)	-	2713987..2715012 (+)	1026	WP_282387446.1	ABC transporter permease	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127289.90 Da
• Isoelectric Point: 6.1543

>NTDB_id=826779 QF117_RS18275 WP_282387438.1 2706810..2710196(+) (chiS) [Vibrio sp. YMD68]
MFRFYRKQKFKRLQNTLMLAFLVLSITPLTVVALFFIHSHSTDLQEQSTSHVTSVRDTKQKQVVDYLYAKESEVMGFVRS
ELAYASGGRFYGLVNAFQNLGADIEQARQHAQQRYIEGSGDQIRTSILPQSSAYIGSERYRLLHKRYHWAYQELLKRSDF
DDILLVDITGNVTYSILKNDYYGTNLLSGKYQNSNLGTTFQTLKELVKEKRANNVDFTPVILSDFSSADGKPVAWLGAPI
IQQGYLHSYAMFRLPNNGITKLIADTNKTSSMRTLLVGQDHQSRSLAFQQEDIKTSIEVIDLALKGLTAVGTYTNTQDEK
TIAAYSPITFKSINWAIVVEVPEKEAFARVHQLEKLFVIAMFSALVLVVIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TMINTERKDEIGRLAVSFERMQRSIREKMKLIKSQNSELESNIHLIKKQNEELHLANKLKDEFLATTSHELRTPLHGMVG
IAESLVSGANGPITADHKYQLNIIISSGQRLATLVDDLLDYHKMRYGNLDIHCSAVDLSSATRLVLELSNHLLGNKPIRI
INQVPEELLWVSADPQRLEQVLYNLIGNAIKYTSEGKIVISANVVDDNLRVQVVDTGQGIPADQLEHIFEPLIQAGSDSS
RYRQGTGLGLSISRQLIELMNGSLYVSSQPMVGTTFSFTLPLALDHEIEAAGLGETSHFHAPDLNEVVLPDQSSLPENPQ
GPLLLVADDEPVNLRILDSFLRIEGYRVRTAKDGHETLEQVQKEKPELLLLDVMMPGLSGYSVCEKLREQYDHSELPIIM
LTALNQTDDRVRGFDAGANDYLSKPFNKQELAARITAHLSASQAEKRRIENDQLQVELKRRAMVEASLLETQGRLLEQLE
SAPEAILCVRDDNKVRFANEAASKLFRRSPEQLKRSNADEMIAPKYLTVELEHYCGNIDIYVEDIRQNISTDILKLPEES
GLKAMYIFNVGGSVNAARIGNLETAVEALSSYAFEGDKDKLQQLKELGGEFTRIADRVGGENKSKQEVMREVLVEAMTNA
IEYWERVTGQSKFAFAEQSGLWRVYLDRSTLQTRTLDKYLRQETLPKTPRWRTVLSSIEYILEHCQEQSPERTHIIALRD
KLQHLLTS

Nucleotide

• Length: 3387 bp

>NTDB_id=826779 QF117_RS18275 WP_282387438.1 2706810..2710196(+) (chiS) [Vibrio sp. YMD68]
ATGTTCAGGTTTTATCGTAAACAGAAATTCAAACGCCTCCAAAACACCTTGATGTTGGCGTTTCTAGTCTTGAGTATCAC
TCCTCTTACCGTCGTGGCACTGTTTTTCATTCATTCTCACAGTACAGACTTACAAGAACAGAGTACGTCTCATGTGACGT
CAGTTCGTGATACAAAACAGAAGCAAGTTGTTGATTATCTGTATGCGAAAGAGTCAGAAGTGATGGGCTTTGTTCGTTCA
GAACTCGCTTATGCCAGTGGTGGGCGCTTTTATGGTTTGGTCAACGCTTTCCAAAACTTAGGCGCCGACATCGAACAGGC
TCGCCAACATGCCCAGCAGCGATACATTGAAGGCTCTGGAGACCAAATTAGAACGTCAATTCTGCCACAATCCAGTGCCT
ACATTGGCAGCGAGCGCTATCGTCTACTTCACAAAAGGTACCACTGGGCCTATCAAGAGTTACTTAAACGCTCCGATTTT
GATGACATCCTGCTTGTCGATATCACCGGTAATGTCACCTATTCCATTTTAAAAAATGACTATTACGGCACCAATCTACT
GAGCGGAAAATATCAAAACTCGAACTTAGGAACGACTTTTCAAACACTAAAAGAGCTGGTCAAAGAAAAGCGCGCAAACA
ATGTTGATTTTACACCGGTCATTCTTTCTGATTTTTCCTCTGCAGACGGAAAACCCGTAGCATGGTTAGGTGCGCCTATT
ATTCAACAAGGTTATTTACACAGTTATGCGATGTTCCGCCTTCCCAATAACGGTATAACTAAACTGATTGCCGATACCAA
TAAAACCTCATCAATGAGAACCTTGCTAGTCGGGCAAGATCACCAAAGCCGCTCTCTGGCTTTCCAGCAGGAAGACATCA
AAACCAGTATTGAAGTCATTGACCTAGCTCTCAAAGGTTTAACCGCGGTTGGAACGTATACCAATACACAAGATGAGAAA
ACCATTGCAGCCTATAGCCCTATCACGTTTAAAAGCATCAACTGGGCTATCGTTGTCGAAGTACCGGAAAAAGAAGCGTT
TGCTCGCGTGCATCAGCTAGAGAAGTTGTTTGTTATCGCCATGTTCAGTGCGTTAGTCCTCGTGGTTATCGCTTCGCATT
ATTTATCGAATTTTATTACATCACCACTGTTAAAACTGACCTGGGCAGCAGAGAAAGTCTCCGCTGGTGATCTCGATGAA
ACGATGATCAATACCGAGCGGAAAGACGAAATTGGCCGATTGGCAGTGAGCTTTGAACGGATGCAACGATCGATTCGAGA
AAAAATGAAGCTCATTAAATCTCAAAACAGCGAACTAGAAAGCAACATTCACCTCATTAAAAAGCAGAATGAAGAGCTTC
ACTTAGCCAATAAGCTTAAAGATGAATTCTTAGCCACAACGTCTCACGAGCTCCGTACTCCACTGCATGGCATGGTCGGC
ATTGCTGAGTCTCTGGTGTCTGGAGCCAATGGCCCAATTACCGCCGATCATAAATACCAGCTCAATATCATCATCAGTAG
CGGTCAACGCCTAGCGACCTTGGTCGATGACCTTCTTGACTACCATAAAATGCGCTATGGAAACCTAGATATTCATTGCA
GTGCCGTCGATCTTTCTAGCGCAACTCGACTGGTTCTAGAATTATCGAACCACCTGCTTGGCAATAAACCGATCAGAATC
ATTAACCAAGTGCCTGAAGAACTGCTTTGGGTTTCCGCTGATCCACAGAGGTTAGAACAGGTCCTATATAACCTTATCGG
CAATGCAATTAAGTATACCTCGGAAGGGAAAATCGTTATTTCTGCCAATGTAGTTGATGACAATCTTCGTGTCCAAGTGG
TTGATACCGGTCAAGGGATCCCTGCGGATCAACTCGAGCATATATTTGAACCATTAATTCAAGCAGGAAGCGACTCTAGC
CGTTACCGTCAAGGGACAGGACTTGGTTTATCAATAAGCCGCCAGTTAATTGAGCTTATGAACGGTTCTTTGTATGTCAG
CAGCCAACCCATGGTCGGCACCACATTCAGCTTTACCCTTCCATTGGCGCTTGACCATGAAATAGAAGCTGCCGGGTTGG
GCGAAACCAGCCACTTCCACGCACCAGATCTCAACGAAGTGGTATTGCCCGATCAAAGTAGTTTGCCTGAAAACCCACAA
GGACCCTTGCTATTAGTCGCTGATGACGAGCCGGTGAACTTACGTATTCTCGATAGCTTTCTACGTATTGAGGGCTACCG
AGTCAGGACAGCAAAAGATGGCCATGAAACCCTAGAGCAAGTGCAGAAAGAGAAGCCGGAACTGCTGCTCTTAGATGTTA
TGATGCCTGGGCTATCTGGCTACAGCGTATGTGAAAAGCTTCGTGAGCAATACGACCACTCAGAGCTGCCTATCATTATG
TTAACGGCCCTTAACCAAACCGACGATCGTGTCAGAGGGTTTGATGCTGGGGCAAACGACTACCTGTCTAAACCCTTTAA
CAAACAAGAGCTAGCGGCTCGAATTACCGCCCACTTATCAGCAAGCCAAGCTGAAAAACGACGCATCGAGAACGATCAGC
TTCAAGTTGAGTTAAAACGACGTGCGATGGTTGAAGCAAGCTTGTTAGAGACTCAAGGTCGCCTACTAGAGCAATTAGAA
TCGGCCCCGGAAGCCATTTTATGCGTGAGGGACGATAATAAAGTGCGCTTTGCTAACGAAGCCGCTTCAAAGCTGTTCAG
ACGCAGCCCCGAGCAATTAAAACGCTCAAACGCGGATGAAATGATCGCCCCGAAATACCTCACCGTTGAGCTAGAACACT
ATTGCGGCAACATTGATATTTATGTTGAGGACATCCGTCAAAACATTTCGACAGACATACTAAAGCTGCCCGAAGAGTCT
GGGTTAAAAGCGATGTATATCTTTAACGTTGGGGGCAGTGTTAACGCGGCACGTATTGGCAACCTAGAAACCGCAGTTGA
AGCCCTTTCAAGTTATGCCTTTGAAGGGGATAAAGATAAACTGCAGCAACTGAAAGAGCTTGGTGGTGAATTTACTCGAA
TTGCCGATCGGGTCGGGGGCGAGAACAAATCTAAACAAGAGGTAATGAGAGAAGTTTTAGTCGAAGCGATGACCAATGCG
ATTGAATATTGGGAGAGAGTCACAGGGCAGAGCAAATTTGCTTTCGCCGAACAAAGCGGCCTATGGCGAGTGTATCTAGA
CAGAAGCACGTTACAAACTCGAACTTTGGACAAGTATTTGCGCCAAGAAACGTTACCTAAGACCCCAAGGTGGAGAACGG
TATTAAGCTCAATTGAATATATATTGGAGCACTGTCAGGAGCAAAGTCCAGAGAGAACACACATCATTGCGCTAAGAGAT
AAGCTACAACACCTCCTAACCAGCTAG

Domains

Predicted by InterproScan.

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Response regulator receiver domain (Response_reg) (725-835)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• HAMP domain (HAMP) (375-427)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	79.167	100	0.792