Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   QF117_RS14270 Genome accession   NZ_CP124614
Coordinates   1790486..1791910 (+) Length   474 a.a.
NCBI ID   WP_282386339.1    Uniprot ID   -
Organism   Vibrio sp. YMD68     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1785486..1796910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF117_RS14235 (QF117_14235) - 1785626..1786018 (-) 393 WP_282386329.1 hypothetical protein -
  QF117_RS14240 (QF117_14240) - 1786257..1787036 (-) 780 WP_282386330.1 nuclease-related domain-containing protein -
  QF117_RS14245 (QF117_14245) - 1787086..1788105 (-) 1020 WP_282386331.1 hypothetical protein -
  QF117_RS14250 (QF117_14250) - 1788129..1788965 (-) 837 WP_282386332.1 TIGR02391 family protein -
  QF117_RS14255 (QF117_14255) - 1789099..1789215 (-) 117 WP_282386333.1 integrase -
  QF117_RS14260 (QF117_14260) - 1789237..1789521 (-) 285 WP_282386335.1 tyrosine-type recombinase/integrase -
  QF117_RS14265 (QF117_14265) - 1789861..1790304 (-) 444 WP_282386337.1 Arm DNA-binding domain-containing protein -
  QF117_RS14270 (QF117_14270) sbcB 1790486..1791910 (+) 1425 WP_282386339.1 exodeoxyribonuclease I Machinery gene
  QF117_RS14275 (QF117_14275) - 1792014..1792379 (+) 366 WP_282386340.1 CidA/LrgA family protein -
  QF117_RS14280 (QF117_14280) - 1792379..1793056 (+) 678 WP_282389492.1 CidB/LrgB family autolysis modulator -
  QF117_RS14285 (QF117_14285) cdd 1793257..1794144 (+) 888 WP_282386341.1 cytidine deaminase -
  QF117_RS14290 (QF117_14290) - 1794435..1795190 (-) 756 WP_282386343.1 SDR family oxidoreductase -
  QF117_RS14295 (QF117_14295) - 1795315..1795911 (+) 597 WP_282386344.1 TetR/AcrR family transcriptional regulator -
  QF117_RS14300 (QF117_14300) - 1796165..1796638 (-) 474 WP_282386345.1 response regulator -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54496.83 Da        Isoelectric Point: 5.1859

>NTDB_id=826777 QF117_RS14270 WP_282386339.1 1790486..1791910(+) (sbcB) [Vibrio sp. YMD68]
MNNNDQPTFFFFDYETWGTSPAKDRPSQFAGVRTDEDFNIIGEPLVIYCQPPADYLPSPEAALITRITPQKALAQGLPEP
EFIAKIHDELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVKWPENEEGYT
SFKLEHLSVANGIEHENAHDAMADVIATIEMAKKLKAAQPKLFNYFLSMRHKRKLNELIDIVSMTPLMHVSGMFGRDCNY
TSWIVPVAWHPTNQNAAIVVDLAKDPAPLLELDADELRTRLYTKRSELAEDELPVPIKLVHINKCPILAPAKTLTAENAE
AIGINRKQCLDNLARLRSHPEIREKLISLYSADREYPASEDVDTKLYDGFFSPADKSAMDIIRATDPANLAALDIRFNDE
RIEPLLFRYRARHYPLSLDEQEQVKWANHCRDYFEQRLEGYMLNLENLVHEHESDEKKMAILKAVYQYVEKIAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=826777 QF117_RS14270 WP_282386339.1 1790486..1791910(+) (sbcB) [Vibrio sp. YMD68]
ATGAATAACAACGATCAACCTACCTTCTTCTTTTTCGATTACGAAACCTGGGGCACGAGTCCAGCTAAAGACAGACCGAG
TCAGTTTGCGGGTGTGCGTACCGACGAAGATTTCAATATTATTGGCGAGCCTCTTGTTATTTATTGTCAACCTCCTGCTG
ATTATTTGCCTTCTCCTGAAGCGGCGTTGATTACTCGAATCACCCCTCAAAAAGCCCTTGCGCAAGGTTTGCCTGAACCC
GAGTTCATTGCCAAGATCCATGACGAGCTCTCAAAACCAAAAACCACGAGCCTGGGTTACAACAGTATTCGTTTTGATGA
TGAAGTGACCCGCTATACCTGTTACCGAAACTTCATCGACCCCTACGCTTGGAGCTGGCAAAACGGTAACTCTCGTTGGG
ATTTACTTGATGTTATGCGCGCCTGTCATGCTCTTCGCCCAGAAGGGGTTAAATGGCCTGAAAATGAAGAGGGTTATACC
AGTTTTAAGCTCGAGCACCTTTCCGTAGCCAATGGGATTGAGCACGAAAATGCGCACGATGCGATGGCAGACGTAATCGC
TACGATTGAAATGGCGAAAAAGCTAAAAGCAGCGCAGCCAAAACTGTTCAATTACTTCTTGAGCATGCGTCATAAACGAA
AACTGAACGAGTTGATTGATATCGTGAGCATGACACCATTAATGCATGTTTCCGGTATGTTTGGACGCGATTGCAATTAT
ACCAGCTGGATTGTGCCTGTTGCATGGCACCCAACCAACCAAAATGCTGCAATCGTTGTGGATTTGGCAAAAGATCCTGC
TCCCTTATTAGAGTTGGACGCTGATGAACTTCGTACTCGTTTATATACCAAACGCAGTGAACTCGCAGAAGATGAGCTTC
CCGTTCCTATTAAGCTCGTTCATATCAACAAGTGTCCTATTCTCGCGCCAGCCAAAACCTTGACGGCAGAAAATGCCGAA
GCCATCGGTATTAATAGAAAGCAATGCTTGGATAATCTGGCACGACTTCGTAGCCACCCTGAGATCAGAGAAAAACTCAT
TAGTTTGTACAGTGCGGACCGCGAGTATCCAGCCAGCGAAGATGTCGACACTAAACTCTATGACGGTTTTTTCTCTCCCG
CAGATAAGTCAGCAATGGACATTATTCGCGCCACTGACCCAGCCAATTTAGCCGCTTTGGACATTCGCTTTAACGATGAG
CGCATTGAACCTCTTCTTTTCCGCTATAGAGCGAGACATTACCCATTGTCTTTAGATGAGCAAGAGCAAGTTAAATGGGC
GAATCATTGCAGAGATTATTTTGAACAAAGGCTCGAAGGTTACATGTTGAATCTTGAAAACCTGGTCCACGAACATGAAA
GTGATGAAAAGAAAATGGCCATTTTGAAAGCGGTGTATCAGTATGTTGAAAAAATAGCGTCTTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

77.378

99.789

0.772