Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   QF117_RS06815 Genome accession   NZ_CP124614
Coordinates   188410..189441 (+) Length   343 a.a.
NCBI ID   WP_282389434.1    Uniprot ID   -
Organism   Vibrio sp. YMD68     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 183410..194441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF117_RS06800 (QF117_06800) - 183797..185089 (-) 1293 WP_282388329.1 malic enzyme-like NAD(P)-binding protein -
  QF117_RS06805 (QF117_06805) rpmE 185520..185735 (-) 216 WP_017036798.1 50S ribosomal protein L31 -
  QF117_RS06810 (QF117_06810) priA 186010..188211 (+) 2202 WP_282388330.1 primosomal protein N' -
  QF117_RS06815 (QF117_06815) cytR 188410..189441 (+) 1032 WP_282389434.1 DNA-binding transcriptional regulator CytR Regulator
  QF117_RS06820 (QF117_06820) - 189563..190114 (+) 552 WP_282388331.1 SPOR domain-containing protein -
  QF117_RS06825 (QF117_06825) hslV 190409..190951 (+) 543 WP_017036794.1 ATP-dependent protease subunit HslV -
  QF117_RS06830 (QF117_06830) hslU 191036..192370 (+) 1335 WP_282388332.1 HslU--HslV peptidase ATPase subunit -
  QF117_RS06835 (QF117_06835) frdD 192476..192853 (-) 378 WP_282389435.1 fumarate reductase subunit FrdD -
  QF117_RS06840 (QF117_06840) frdC 192867..193250 (-) 384 WP_282388333.1 fumarate reductase subunit FrdC -
  QF117_RS06845 (QF117_06845) - 193253..194011 (-) 759 WP_282388334.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37899.60 Da        Isoelectric Point: 6.6061

>NTDB_id=826761 QF117_RS06815 WP_282389434.1 188410..189441(+) (cytR) [Vibrio sp. YMD68]
MKEERVKNMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDP
YFSEIIRGIEDAAMEHGYLVLLGDSSQQKKREASFVNLVFTKQADGMLLLGSDLPFDVSKAEQKNLPPMVMACEFAPELE
LPTVHIDNLTSAFEAVNYLTQMGHKRVAQISGPQHAVLCQFRQQGYQQALRRGGLSMNPTYTTYGDFTFEAGAKAVRALL
SLPEPPTAIFCHSDVMAIGAIQEAKKLGLRVPQDLSVVGFDDIQFSEYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDV
RAGSRLLETHLVVRESAAPPRLV

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=826761 QF117_RS06815 WP_282389434.1 188410..189441(+) (cytR) [Vibrio sp. YMD68]
ATAAAGGAAGAGAGGGTTAAAAATATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTCTCAACGGCTACTGTGTC
CAGAGCTCTGATGAATCCAGAGAAAGTATCGTCGAGCACACGTAAGCGTGTTGAAGATGCTGTATTGGAAGCTGGCTATT
CACCAAACTCGTTGGCGCGAAACCTGCGTCGAAATGAATCTAAAACCATTGTCACTATCGTCCCTGATATTTGCGATCCT
TATTTCTCTGAAATTATTCGTGGTATTGAAGATGCAGCAATGGAGCATGGTTACCTTGTTTTACTCGGTGACAGCTCACA
GCAAAAAAAGCGCGAAGCCTCTTTTGTTAATCTGGTTTTCACTAAGCAAGCGGATGGTATGTTGCTACTTGGCAGCGATC
TTCCCTTTGACGTGAGCAAAGCCGAGCAAAAAAATCTACCGCCAATGGTGATGGCTTGTGAATTTGCTCCAGAACTTGAA
TTACCTACGGTGCATATCGATAACCTGACATCGGCATTTGAAGCGGTGAACTATTTGACACAAATGGGTCATAAACGTGT
TGCTCAAATCTCAGGGCCTCAACATGCGGTGCTTTGCCAGTTCCGTCAGCAAGGTTACCAACAGGCATTGAGACGCGGTG
GCTTGAGCATGAACCCGACTTACACCACCTATGGTGACTTTACTTTTGAAGCCGGTGCAAAAGCAGTAAGAGCCTTATTA
TCACTTCCTGAGCCACCAACGGCGATTTTCTGTCACAGCGATGTCATGGCGATTGGTGCGATTCAAGAAGCGAAAAAACT
GGGGTTACGCGTTCCGCAAGATCTATCGGTGGTTGGCTTTGATGATATTCAATTCTCAGAGTACTGTGATCCACCATTAA
CGACGATCTCTCAGCCTCGTTATGAAATCGGTCGTCAAGCGATGCTCATGATGCTTGAGTTATTGAGAGGGCACGATGTA
CGAGCCGGATCGCGTCTTTTAGAAACGCATTTGGTGGTTAGGGAAAGCGCTGCGCCACCAAGACTGGTGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

92.47

96.793

0.895
  cytR Vibrio parahaemolyticus RIMD 2210633

88.529

99.125

0.878