Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SAKRST72_RS08925 Genome accession   NZ_CP138568
Coordinates   1859829..1860569 (-) Length   246 a.a.
NCBI ID   WP_029160280.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SAWL001     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1854829..1865569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAKRST72_RS08900 (SAKRST72_08900) hemH 1855705..1856628 (-) 924 WP_000162881.1 ferrochelatase -
  SAKRST72_RS08905 (SAKRST72_08905) hemE 1856686..1857723 (-) 1038 WP_000233526.1 uroporphyrinogen decarboxylase -
  SAKRST72_RS08910 (SAKRST72_08910) - 1857713..1857823 (-) 111 WP_001790154.1 hypothetical protein -
  SAKRST72_RS08915 (SAKRST72_08915) traP 1857986..1858489 (+) 504 WP_000737976.1 signal transduction protein TRAP -
  SAKRST72_RS08920 (SAKRST72_08920) - 1858613..1859836 (-) 1224 WP_000551840.1 ABC transporter permease -
  SAKRST72_RS08925 (SAKRST72_08925) pptA 1859829..1860569 (-) 741 WP_029160280.1 ABC transporter ATP-binding protein Regulator
  SAKRST72_RS08930 (SAKRST72_08930) - 1860703..1861125 (+) 423 WP_000004981.1 HIT family protein -
  SAKRST72_RS08935 (SAKRST72_08935) - 1861267..1861632 (+) 366 WP_000648118.1 YtxH domain-containing protein -
  SAKRST72_RS08940 (SAKRST72_08940) - 1862365..1862922 (+) 558 WP_000477959.1 DUF3267 domain-containing protein -
  SAKRST72_RS08945 (SAKRST72_08945) - 1863127..1864089 (+) 963 WP_000782127.1 foldase protein PrsA -
  SAKRST72_RS08950 (SAKRST72_08950) yhaM 1864210..1865151 (-) 942 WP_001244175.1 3'-5' exoribonuclease YhaM -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27735.10 Da        Isoelectric Point: 4.7455

>NTDB_id=826751 SAKRST72_RS08925 WP_029160280.1 1859829..1860569(-) (pptA) [Staphylococcus aureus strain SAWL001]
MTVKVEQFTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHKQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=826751 SAKRST72_RS08925 WP_029160280.1 1859829..1860569(-) (pptA) [Staphylococcus aureus strain SAWL001]
ATGACAGTTAAAGTAGAACAGTTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATTGTTGGACTTATTGGCCTTAATGGCGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGATATCAACATTAATGATGACATAGAGGCTTATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATTTATGAAGAACTCACATTAGAGGAACACATTGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAGCGATGAATCGAGCAATGCCATTATTAAAGACATTCCGTTTAGAAAATGAATTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGTCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCA
TTCCTTGGCCTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCAACAGCTGAACGTTATTGTGATCGTTTTATCATACTAGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACTGGCTTACATAAACAAACATTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

97.154

0.557
  pptA Streptococcus thermophilus LMD-9

56.067

97.154

0.545