Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QJQ47_RS11125 Genome accession   NZ_CP124612
Coordinates   2371528..2372163 (+) Length   211 a.a.
NCBI ID   WP_283859340.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY3649     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2366528..2377163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJQ47_RS11110 (QJQ47_11120) - 2367234..2368478 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  QJQ47_RS11115 (QJQ47_11125) - 2368566..2369099 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  QJQ47_RS11120 (QJQ47_11130) comA 2369230..2371455 (+) 2226 WP_031633598.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QJQ47_RS11125 (QJQ47_11135) exbB 2371528..2372163 (+) 636 WP_283859340.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QJQ47_RS11130 (QJQ47_11140) - 2372160..2372600 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  QJQ47_RS11135 (QJQ47_11145) lpxK 2372600..2373598 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  QJQ47_RS11140 (QJQ47_11150) - 2373636..2373821 (+) 186 WP_003091157.1 Trm112 family protein -
  QJQ47_RS11145 (QJQ47_11155) kdsB 2373821..2374585 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QJQ47_RS11150 (QJQ47_11160) - 2374585..2375049 (+) 465 WP_034040018.1 low molecular weight protein-tyrosine-phosphatase -
  QJQ47_RS11155 (QJQ47_11165) murB 2375046..2376065 (+) 1020 WP_034040020.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22889.08 Da        Isoelectric Point: 7.2795

>NTDB_id=826730 QJQ47_RS11125 WP_283859340.1 2371528..2372163(+) (exbB) [Pseudomonas aeruginosa strain NY3649]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMNNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=826730 QJQ47_RS11125 WP_283859340.1 2371528..2372163(+) (exbB) [Pseudomonas aeruginosa strain NY3649]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGAACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81