Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   Bogor_RS11570 Genome accession   NZ_CP124604
Coordinates   2656336..2657655 (-) Length   439 a.a.
NCBI ID   WP_004195253.1    Uniprot ID   A0AAX1X7P9
Organism   Burkholderia mallei strain Bogor     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2651336..2662655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Bogor_RS11555 (Bogor_002263) - 2652242..2652637 (-) 396 WP_011204219.1 nitrite reductase (NAD(P)H) small subunit -
  Bogor_RS11560 (Bogor_002264) nirB 2652706..2655150 (-) 2445 WP_004195264.1 nitrite reductase large subunit NirB -
  Bogor_RS11565 (Bogor_002265) maiA 2655535..2656179 (+) 645 WP_004195258.1 maleylacetoacetate isomerase -
  Bogor_RS11570 (Bogor_002266) pilA 2656336..2657655 (-) 1320 WP_004195253.1 signal recognition particle-docking protein FtsY Machinery gene
  Bogor_RS11575 (Bogor_002267) rsmD 2657907..2658533 (+) 627 WP_004195251.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  Bogor_RS11580 (Bogor_002268) coaD 2658644..2659144 (+) 501 WP_004195249.1 pantetheine-phosphate adenylyltransferase -
  Bogor_RS11585 (Bogor_002269) - 2659207..2659473 (+) 267 WP_004195247.1 YfhL family 4Fe-4S dicluster ferredoxin -
  Bogor_RS11590 (Bogor_002270) hisC 2659652..2660722 (-) 1071 WP_011204217.1 histidinol-phosphate transaminase -
  Bogor_RS11595 (Bogor_002271) pth 2660811..2661416 (-) 606 WP_004202941.1 aminoacyl-tRNA hydrolase -
  Bogor_RS11600 (Bogor_002272) - 2661530..2662144 (-) 615 WP_004200150.1 50S ribosomal protein L25/general stress protein Ctc -

Sequence

Protein


Download         Length: 439 a.a.        Molecular weight: 46404.68 Da        Isoelectric Point: 6.0726

>NTDB_id=826678 Bogor_RS11570 WP_004195253.1 2656336..2657655(-) (pilA) [Burkholderia mallei strain Bogor]
MFSFFKRFKKAPDAAPAEPQQAPDAPRDASRAPASPDAARVDAPAAPQPRDERSENHDRPEHDETPTAEHSRSGAQPAAR
ATPPASAAASEAPVGQPRAAAARASEPAPSVVMTVTPSSNGRHGVVETVEIVPPPAPEPAAKKSWIARLKSGLAKTSSSI
TNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDALREKVRAGRLTDPQQVKDALRGLLVELLAPLEKSFVLGRAQPL
VMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESGDPAAVIFDAVSAARARN
IDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVKAFDDALGLTGLIVTKLDGTAKGG
ILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADALLG

Nucleotide


Download         Length: 1320 bp        

>NTDB_id=826678 Bogor_RS11570 WP_004195253.1 2656336..2657655(-) (pilA) [Burkholderia mallei strain Bogor]
ATGTTCAGTTTCTTCAAACGATTCAAGAAAGCGCCCGATGCCGCCCCGGCCGAGCCGCAGCAAGCGCCCGACGCGCCGCG
GGACGCTTCCCGCGCACCGGCATCGCCCGACGCCGCGCGAGTCGACGCGCCGGCCGCGCCGCAGCCGCGCGACGAGCGCA
GCGAAAACCACGATCGCCCCGAGCACGACGAAACGCCGACCGCCGAGCATTCCCGTTCCGGCGCGCAGCCCGCCGCGCGC
GCGACGCCGCCCGCGTCCGCCGCCGCGTCGGAAGCGCCGGTCGGGCAGCCGCGCGCCGCCGCCGCGCGCGCAAGCGAGCC
CGCGCCGTCGGTCGTGATGACGGTCACGCCGTCGTCGAACGGCCGCCACGGCGTCGTCGAGACGGTCGAGATCGTGCCGC
CGCCCGCGCCCGAGCCGGCCGCGAAGAAATCGTGGATCGCGCGGCTGAAGTCCGGCCTCGCGAAGACGAGCTCGAGCATC
ACGAACGTATTCGTCAACACGAAAATCGACGACGCGCTCTACGAGGAGCTCGAGACGGCGCTGCTGATGTCCGACGCCGG
CATCGACGCGACCGAGCATCTGCTCGACGCGCTGCGCGAAAAGGTGCGCGCGGGCCGCCTCACCGATCCGCAGCAGGTGA
AGGACGCGCTGCGCGGGCTGCTCGTCGAGCTGCTGGCGCCGCTCGAGAAGTCGTTCGTGCTCGGCCGCGCGCAGCCGCTC
GTGATGATGATCGCGGGCGTGAACGGCGCCGGCAAGACGACGAGCATCGGCAAGCTCGCGAAGCATCTGCAGAGCTTCGA
TCAATCGGTGCTGCTCGCCGCGGGCGACACGTTTCGCGCCGCCGCACGCGAGCAGCTCGCGATCTGGGGCGAACGCAACA
ACGTGACCGTCGTCCAGCAGGAAAGCGGCGACCCCGCCGCGGTGATCTTCGATGCGGTCAGCGCCGCGCGCGCGCGCAAC
ATCGACGTGATGATGGCCGACACCGCAGGCCGCCTGCCGACGCAGCTGCATCTGATGGAAGAGCTCCGGAAGGTGAAGCG
CGTGATCGGCAAGGCGCACGACGGCGCGCCGCACGAGGTGCTGCTCGTGATCGACGCGAACACCGGCCAGAACGCGCTCG
CGCAGGTAAAGGCGTTCGACGACGCGCTCGGCCTCACGGGCCTCATCGTCACGAAGCTCGACGGCACCGCGAAGGGCGGC
ATCCTCGCCGCGATCGCGCGCCAGCGGCCGATTCCGGTGTACTTCATCGGCATCGGCGAGAAGGTCGAGGATCTGCAGCC
GTTCAGCGCGGAGGAATTCGCGGACGCGCTGCTCGGCTAG

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(158-218)

SRP54-type protein, GTPase domain (SRP54)

(240-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.887

100

0.503