Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   SHN03_RS10270 Genome accession   NZ_CP138566
Coordinates   2081416..2082126 (+) Length   236 a.a.
NCBI ID   WP_000094091.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AUSMDU00020487     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2076416..2087126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHN03_RS10215 - 2077603..2077866 (-) 264 WP_001205732.1 hypothetical protein -
  SHN03_RS10220 - 2077875..2078135 (-) 261 WP_000291510.1 DUF1108 family protein -
  SHN03_RS10225 - 2078140..2078442 (-) 303 WP_000165371.1 DUF2482 family protein -
  SHN03_RS10230 - 2078537..2078698 (-) 162 WP_000048129.1 DUF1270 family protein -
  SHN03_RS10235 - 2078695..2079018 (-) 324 WP_001120201.1 DUF771 domain-containing protein -
  SHN03_RS10240 - 2079073..2079453 (+) 381 Protein_1982 DUF2513 domain-containing protein -
  SHN03_RS10245 - 2079440..2079637 (-) 198 WP_001148862.1 hypothetical protein -
  SHN03_RS10250 - 2079653..2080405 (-) 753 WP_001148635.1 phage antirepressor KilAC domain-containing protein -
  SHN03_RS10255 - 2080456..2080785 (+) 330 WP_000128908.1 hypothetical protein -
  SHN03_RS10260 - 2080774..2080989 (-) 216 WP_001025405.1 MW1434 family type I TA system toxin -
  SHN03_RS10265 - 2081005..2081244 (-) 240 WP_000548575.1 helix-turn-helix transcriptional regulator -
  SHN03_RS10270 irvR 2081416..2082126 (+) 711 WP_000094091.1 helix-turn-helix domain-containing protein Regulator
  SHN03_RS10275 - 2082138..2082284 (+) 147 WP_001049401.1 hypothetical protein -
  SHN03_RS10280 - 2082281..2082466 (+) 186 WP_000109193.1 hypothetical protein -
  SHN03_RS10285 - 2082522..2083106 (+) 585 WP_000825943.1 hypothetical protein -
  SHN03_RS10290 - 2083336..2083518 (+) 183 WP_000694772.1 hypothetical protein -
  SHN03_RS10295 - 2083618..2084601 (+) 984 WP_001558608.1 glycosyltransferase family 2 protein -
  SHN03_RS10300 - 2084612..2084854 (+) 243 WP_000427213.1 hypothetical protein -
  SHN03_RS10305 - 2084917..2085954 (+) 1038 WP_000857181.1 tyrosine-type recombinase/integrase -
  SHN03_RS10310 sph 2086011..2086835 (+) 825 Protein_1996 sphingomyelin phosphodiesterase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26884.44 Da        Isoelectric Point: 5.1973

>NTDB_id=826669 SHN03_RS10270 WP_000094091.1 2081416..2082126(+) (irvR) [Staphylococcus aureus strain AUSMDU00020487]
MSSFSSNLERLMNKRDMSDSELAELVDVNRTTVTRWRKGIRSPKLDKLPEIANVFGVKPLDLIHDMDDSKIIEEIHNVSS
QLTPPRQSNVLKYATNQLEEQNNDSDDNLVDFNSYIQEKSEVDIYGCASAGIGERLYNEPISKEFVRGYVPAHDIALKVN
GDSMEPLFKNGQIIFIEKSHTIKDGQIGVFIINGDAYVKKVYVEDNRLTLVSLNKKYKDLHFYDNESVRLVGKVIL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=826669 SHN03_RS10270 WP_000094091.1 2081416..2082126(+) (irvR) [Staphylococcus aureus strain AUSMDU00020487]
ATGAGTTCATTTTCTTCGAATCTAGAACGTCTGATGAACAAAAGAGATATGAGTGATAGTGAATTAGCAGAATTAGTAGA
TGTAAATAGAACAACAGTCACAAGATGGAGAAAGGGAATTAGAAGTCCAAAACTAGATAAATTACCTGAAATAGCTAACG
TTTTTGGAGTTAAACCCTTAGATTTAATACATGATATGGATGATTCGAAAATTATTGAAGAAATTCATAACGTGTCATCT
CAACTCACGCCTCCAAGACAAAGCAATGTACTAAAATATGCGACTAATCAATTAGAAGAGCAAAATAATGACAGTGATGA
TAATCTGGTAGATTTCAATTCTTACATTCAAGAAAAATCCGAAGTGGATATATATGGTTGTGCGTCTGCTGGTATTGGTG
AAAGATTATATAACGAACCTATTTCAAAAGAATTCGTAAGAGGTTATGTCCCCGCACATGATATAGCTTTAAAAGTAAAT
GGAGACTCAATGGAGCCGTTATTTAAAAATGGACAAATTATATTCATTGAAAAATCTCACACTATCAAAGATGGACAAAT
AGGCGTCTTTATTATAAATGGAGATGCTTACGTAAAGAAGGTTTATGTAGAAGATAACAGATTAACGTTGGTTTCTTTAA
ATAAAAAGTATAAAGATTTACATTTTTATGATAATGAAAGTGTGAGGTTAGTTGGAAAAGTTATTTTATAG

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(124-235)

Helix-turn-helix (HTH_3)

(8-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

30.769

100

0.373