Detailed information NTG0826658

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: QI003_RS22235
• Genome accession: NZ_CP124601
• Coordinates: 4409961..4411106 (+)
• Length: 381 a.a.
• NCBI ID: WP_103031174.1
• Uniprot ID: -
• Organism: Bacillus stercoris strain BS21
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 4404961..4416106

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QI003_RS22215 (QI003_22215)	-	4404976..4406256 (+)	1281	WP_282373766.1	pitrilysin family protein	-
QI003_RS22220 (QI003_22220)	-	4406253..4406954 (+)	702	WP_282373767.1	bacteriocin biosynthesis protein AlbG	-
QI003_RS22225 (QI003_22225)	-	4406960..4408336 (-)	1377	WP_282373768.1	YncE family protein	-
QI003_RS22230 (QI003_22230)	-	4408376..4409731 (-)	1356	WP_282373769.1	YncE family protein	-
QI003_RS22235 (QI003_22235)	rapF	4409961..4411106 (+)	1146	WP_103031174.1	tetratricopeptide repeat protein	Regulator
QI003_RS22240 (QI003_22240)	-	4411090..4411209 (+)	120	WP_014665774.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
QI003_RS22245 (QI003_22245)	-	4411308..4411877 (+)	570	WP_282373770.1	YbaK/EbsC family protein	-
QI003_RS22250 (QI003_22250)	speB	4411812..4412684 (-)	873	WP_003227545.1	agmatinase	-
QI003_RS22255 (QI003_22255)	speE	4412745..4413575 (-)	831	WP_003227543.1	spermidine synthase	-
QI003_RS22260 (QI003_22260)	-	4413777..4415852 (+)	2076	WP_206868596.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45533.19 Da
• Isoelectric Point: 5.0684

>NTDB_id=826658 QI003_RS22235 WP_103031174.1 4409961..4411106(+) (rapF) [Bacillus stercoris strain BS21]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDRREYVLAIQFFKKAESKLVFVKDKIDKAEFFFKMSEVYYYMKQTYVS
MDYARQAFEIYSEQTTYDIRMIQCQSLFGANFLDLKQYEKAIAHFQKAFTLAKAEQQPQLMGRTLYNIALCKQNQNSFES
AIEYVKKSIQVFEGSKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGKEYSAAAGDTVYLTEFEFLESLYLSGPDEERI
EKCFVFLEGKMMYADIEDFALDVAKYYHQQENYKKASHYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1146 bp

>NTDB_id=826658 QI003_RS22235 WP_103031174.1 4409961..4411106(+) (rapF) [Bacillus stercoris strain BS21]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGACCAAGACCTTCATTTGTACTATT
CACTAATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTATTATTTTAATTTCTTTAG
AGGCATGTATGAGCTGGATCGCCGTGAATATGTATTAGCCATTCAATTCTTTAAAAAAGCTGAGAGCAAACTGGTTTTTG
TGAAAGACAAAATCGATAAAGCGGAATTCTTTTTCAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTCTCC
ATGGACTATGCACGTCAAGCATTCGAAATATACAGTGAACAGACTACATATGATATCAGAATGATTCAATGTCAGTCCTT
ATTCGGAGCCAACTTTTTGGATTTAAAACAATACGAAAAAGCAATTGCCCATTTTCAAAAAGCCTTTACACTTGCAAAAG
CAGAGCAGCAGCCGCAATTAATGGGAAGAACTCTTTATAACATAGCACTCTGCAAGCAAAACCAAAACAGTTTTGAATCA
GCGATAGAGTATGTAAAAAAATCTATTCAAGTATTTGAAGGATCTAAAATGCTCCCTTCACTGCCACAAGCTTTTTTCCT
AATTACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCCTGTGAATATCATAAAAAAGGAAAAGAGTATTCTGCAG
CTGCGGGAGATACCGTGTATCTAACGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCGGATGAGGAACGGATA
GAAAAATGTTTTGTTTTTCTTGAAGGTAAAATGATGTATGCAGATATCGAGGACTTCGCACTTGATGTTGCTAAATATTA
TCATCAACAGGAAAATTACAAAAAAGCATCTCATTACTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGG
TGAATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_8) (263-290)

• Tetratricopeptide repeat (TPR_12) (189-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	80.052	100	0.801
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572