Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QI003_RS16270 Genome accession   NZ_CP124601
Coordinates   3245764..3246174 (-) Length   136 a.a.
NCBI ID   WP_069149902.1    Uniprot ID   -
Organism   Bacillus stercoris strain BS21     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3240764..3251174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI003_RS16240 (QI003_16240) - 3241204..3241722 (-) 519 WP_003226126.1 YqeG family HAD IIIA-type phosphatase -
  QI003_RS16245 (QI003_16245) - 3242084..3242224 (+) 141 WP_003226124.1 sporulation histidine kinase inhibitor Sda -
  QI003_RS16250 (QI003_16250) - 3242529..3243260 (-) 732 WP_014664678.1 SGNH/GDSL hydrolase family protein -
  QI003_RS16255 (QI003_16255) - 3243693..3244319 (+) 627 WP_103030674.1 TVP38/TMEM64 family protein -
  QI003_RS16260 (QI003_16260) - 3244338..3244772 (-) 435 Protein_3160 NAD(P)-binding domain-containing protein -
  QI003_RS16265 (QI003_16265) - 3245009..3245731 (+) 723 WP_282372762.1 DUF308 domain-containing protein -
  QI003_RS16270 (QI003_16270) nucA/comI 3245764..3246174 (-) 411 WP_069149902.1 sporulation-specific Dnase NucB Machinery gene
  QI003_RS16275 (QI003_16275) sigK 3246370..3247098 (+) 729 WP_013308023.1 RNA polymerase sporulation sigma factor SigK -
  QI003_RS16280 (QI003_16280) - 3247211..3247315 (-) 105 Protein_3164 recombinase -
  QI003_RS16285 (QI003_16285) - 3247273..3247451 (-) 179 Protein_3165 hypothetical protein -
  QI003_RS16290 (QI003_16290) psiE 3247999..3248415 (-) 417 WP_161986832.1 phosphate-starvation-inducible protein PsiE -
  QI003_RS16295 (QI003_16295) yrkQ 3248460..3249758 (-) 1299 WP_282372766.1 two-component system sensor histidine kinase YrkQ -
  QI003_RS16300 (QI003_16300) yrkP 3249745..3250440 (-) 696 WP_282372767.1 two-component response regulator YrkP -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15012.03 Da        Isoelectric Point: 4.9203

>NTDB_id=826637 QI003_RS16270 WP_069149902.1 3245764..3246174(-) (nucA/comI) [Bacillus stercoris strain BS21]
MKKWMAGLFLAAAVLLCVMVPQQIQGASLYDKVLYFPLSRYPETGDHIRDAIAEGHSEICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ

Nucleotide


Download         Length: 411 bp        

>NTDB_id=826637 QI003_RS16270 WP_069149902.1 3245764..3246174(-) (nucA/comI) [Bacillus stercoris strain BS21]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTGTAATGGTTCCGCAGCAGATCCAAGGCGC
TTCTTTGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACAGGCGATCATATTAGAGATGCGATTGCAG
AGGGACATTCTGAGATTTGCACCATAGATAGAGATGGAGCAGACAAAAGGCGGGAGGAATCATTAAAGGGTATTCCGACG
AAGCCGGGCTATGATCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGAGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGGGCCGGCTCATGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(40-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

64.348

84.559

0.544