Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QI003_RS16025 Genome accession   NZ_CP124601
Coordinates   3203558..3204325 (-) Length   255 a.a.
NCBI ID   WP_014664644.1    Uniprot ID   -
Organism   Bacillus stercoris strain BS21     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3198558..3209325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI003_RS16005 (QI003_16005) - 3198733..3199545 (-) 813 WP_014664641.1 pyruvate, water dikinase regulatory protein -
  QI003_RS16010 (QI003_16010) ccpN 3199571..3200209 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  QI003_RS16015 (QI003_16015) glyS 3200342..3202381 (-) 2040 WP_282372712.1 glycine--tRNA ligase subunit beta -
  QI003_RS16020 (QI003_16020) glyQ 3202374..3203261 (-) 888 WP_040083765.1 glycine--tRNA ligase subunit alpha -
  QI003_RS16025 (QI003_16025) recO 3203558..3204325 (-) 768 WP_014664644.1 DNA repair protein RecO Machinery gene
  QI003_RS16030 (QI003_16030) - 3204362..3204505 (-) 144 WP_003230053.1 YqzL family protein -
  QI003_RS16035 (QI003_16035) era 3204653..3205558 (-) 906 WP_282372713.1 GTPase Era -
  QI003_RS16040 (QI003_16040) - 3205539..3205949 (-) 411 WP_014664646.1 cytidine deaminase -
  QI003_RS16045 (QI003_16045) - 3206068..3206439 (-) 372 WP_069149890.1 diacylglycerol kinase family protein -
  QI003_RS16050 (QI003_16050) ybeY 3206420..3206893 (-) 474 WP_014664648.1 rRNA maturation RNase YbeY -
  QI003_RS16055 (QI003_16055) pgpH 3206894..3209029 (-) 2136 WP_080488017.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29370.06 Da        Isoelectric Point: 8.3088

>NTDB_id=826633 QI003_RS16025 WP_014664644.1 3203558..3204325(-) (recO) [Bacillus stercoris strain BS21]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEERKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=826633 QI003_RS16025 WP_014664644.1 3203558..3204325(-) (recO) [Bacillus stercoris strain BS21]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTTTTAATGCAAAAAACATCAGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCCTATGCCGCATATATTGCTGAATTAGTCGACAGAGGCACAGAGGAAAGAAAGCC
AAATCCTTATTTATTTGAATTTATATTAGAATCACTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGGCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACTTTTCACTTTTCTGTCCGTGATAATGGTTTTATATGCCATCGCTGTTTTGAAAAAGATCCTTACAGGATTCCGATTAA
ACCGCAAACAGCAAGGCTGTTGAGACTCTTTTATTACTTCGATCTGTCGAGGCTGGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTGTATTACGAAGAATATTCAGGGTTATATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992