Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   QI003_RS12905 Genome accession   NZ_CP124601
Coordinates   2618532..2619668 (-) Length   378 a.a.
NCBI ID   WP_282372175.1    Uniprot ID   -
Organism   Bacillus stercoris strain BS21     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2612215..2621821 2618532..2619668 within 0


Gene organization within MGE regions


Location: 2612215..2621821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI003_RS12865 (QI003_12865) - 2612215..2612505 (-) 291 WP_069839412.1 contact-dependent growth inhibition system immunity protein -
  QI003_RS12870 (QI003_12870) - 2612524..2614383 (-) 1860 WP_282372172.1 T7SS effector LXG polymorphic toxin -
  QI003_RS12875 (QI003_12875) - 2615284..2615486 (+) 203 Protein_2487 phage holin family protein -
  QI003_RS12880 (QI003_12880) - 2615529..2616336 (+) 808 Protein_2488 N-acetylmuramoyl-L-alanine amidase -
  QI003_RS12885 (QI003_12885) - 2616999..2617457 (-) 459 WP_282372173.1 SMI1/KNR4 family protein -
  QI003_RS12890 (QI003_12890) - 2617472..2617696 (-) 225 Protein_2490 HNH/ENDO VII family nuclease -
  QI003_RS12895 (QI003_12895) - 2617746..2618324 (+) 579 Protein_2491 UV damage repair protein UvrX -
  QI003_RS12900 (QI003_12900) - 2618366..2618542 (-) 177 WP_282372174.1 aspartate phosphatase -
  QI003_RS12905 (QI003_12905) rapC 2618532..2619668 (-) 1137 WP_282372175.1 tetratricopeptide repeat protein Regulator
  QI003_RS12910 (QI003_12910) - 2619958..2620470 (+) 513 WP_069839407.1 GNAT family protein -
  QI003_RS12915 (QI003_12915) - 2620751..2621392 (+) 642 WP_282372176.1 DUF3885 domain-containing protein -
  QI003_RS12920 (QI003_12920) - 2621657..2621821 (+) 165 WP_003231681.1 hypothetical protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44758.04 Da        Isoelectric Point: 4.8234

>NTDB_id=826620 QI003_RS12905 WP_282372175.1 2618532..2619668(-) (rapC) [Bacillus stercoris strain BS21]
MEQLIPSSAVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMEEDQDLLLYYSLMCFRHQIMLDYLEPKTMNEERPEIS
DLLEKIESNQTDLKGILEYYFNFFRGMYEFEQYEYLNAISFYKQAERKLSLVADEIERAEFHYKVAEIYYHMKQTHMSMH
HIVQAIDSYKAHENYTVRVIQCSFVIGLNYLDMDFPEKAIPHFKDALDKAREIDMSRLIGSSLYNLGLCLFAEEAYEKAA
EYFKEGIRVYQDNGYEHSNRLLDILLMLTKTTFKMRNHSEGTSWCAHGLSLSKDLNDEIMAKMFEFIHALYVDNDKGKLN
SILNYLELKSMFSDVEDLAADAAKYYNEKEDHKVAVVYYEKVLYARKQIQRGDCLYET

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=826620 QI003_RS12905 WP_282372175.1 2618532..2619668(-) (rapC) [Bacillus stercoris strain BS21]
ATGGAGCAATTAATTCCGTCATCCGCAGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCAGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGGAGGAAGACCAAGATTTATTGCTGTACTATT
CTCTCATGTGTTTTCGCCATCAAATAATGCTGGATTACCTTGAACCAAAAACAATGAACGAAGAACGGCCTGAAATTTCA
GACTTATTAGAAAAGATTGAAAGTAACCAAACTGATTTGAAAGGGATTCTTGAATATTATTTTAACTTTTTCCGTGGAAT
GTATGAATTTGAACAATACGAATATCTTAATGCCATAAGCTTCTATAAGCAAGCCGAGAGAAAATTATCACTTGTTGCAG
ATGAGATTGAACGAGCAGAATTCCACTACAAAGTTGCAGAAATTTATTATCATATGAAGCAAACTCATATGTCGATGCAT
CACATTGTTCAAGCAATTGATAGTTATAAAGCACATGAAAACTACACTGTAAGAGTTATTCAATGCTCATTTGTCATCGG
TCTAAACTATTTGGATATGGACTTCCCTGAAAAAGCGATCCCTCATTTTAAAGATGCTCTAGATAAAGCAAGAGAAATCG
ATATGTCACGATTAATCGGATCATCTCTGTACAATCTTGGCTTATGTTTATTTGCTGAGGAAGCTTATGAAAAGGCAGCT
GAGTACTTTAAGGAGGGTATTAGAGTATACCAGGATAATGGGTATGAGCACTCAAATCGTTTATTAGACATCTTACTTAT
GTTGACAAAAACCACATTTAAAATGAGAAATCACTCCGAGGGAACTTCTTGGTGTGCACATGGTCTGTCTTTATCCAAAG
ATTTAAACGATGAGATAATGGCCAAAATGTTTGAATTCATTCATGCCCTATATGTAGATAACGACAAAGGAAAATTAAAT
TCGATTCTAAATTATTTAGAATTAAAGTCAATGTTTTCAGACGTGGAGGATTTAGCAGCAGATGCAGCGAAGTATTACAA
TGAAAAAGAAGACCATAAAGTGGCTGTTGTTTATTATGAGAAAGTGCTTTATGCCCGTAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAACTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(186-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

48.413

100

0.484
  rapF Bacillus subtilis subsp. subtilis str. 168

45.263

100

0.455