Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QI003_RS11075 Genome accession   NZ_CP124601
Coordinates   2222632..2223252 (+) Length   206 a.a.
NCBI ID   WP_014664374.1    Uniprot ID   -
Organism   Bacillus stercoris strain BS21     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2217632..2228252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI003_RS11035 (QI003_11035) - 2218763..2219269 (-) 507 WP_282372467.1 PTS glucose transporter subunit IIA -
  QI003_RS11040 (QI003_11040) - 2219408..2219827 (+) 420 WP_282372469.1 Hsp20/alpha crystallin family protein -
  QI003_RS11045 (QI003_11045) - 2219848..2220225 (-) 378 WP_014664370.1 YppG family protein -
  QI003_RS11050 (QI003_11050) - 2220412..2220600 (+) 189 WP_003230690.1 YppF family protein -
  QI003_RS11055 (QI003_11055) - 2220640..2221011 (-) 372 WP_069149771.1 YppE family protein -
  QI003_RS11060 (QI003_11060) - 2221057..2221302 (-) 246 WP_014664372.1 DUF5446 family protein -
  QI003_RS11065 (QI003_11065) sspM 2221500..2221604 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  QI003_RS11070 (QI003_11070) - 2221629..2222591 (-) 963 WP_040082801.1 DUF2515 domain-containing protein -
  QI003_RS11075 (QI003_11075) recU 2222632..2223252 (+) 621 WP_014664374.1 Holliday junction resolvase RecU Machinery gene
  QI003_RS11080 (QI003_11080) - 2223274..2226018 (+) 2745 WP_282372472.1 PBP1A family penicillin-binding protein -
  QI003_RS11085 (QI003_11085) - 2226092..2226586 (-) 495 WP_069149774.1 YpoC family protein -
  QI003_RS11090 (QI003_11090) nth 2226583..2227242 (-) 660 WP_014664377.1 endonuclease III -
  QI003_RS11095 (QI003_11095) dnaD 2227261..2227959 (-) 699 WP_014664378.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23902.03 Da        Isoelectric Point: 9.6240

>NTDB_id=826615 QI003_RS11075 WP_014664374.1 2222632..2223252(+) (recU) [Bacillus stercoris strain BS21]
MIRYPNGKTFQPKHSVSSQSSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=826615 QI003_RS11075 WP_014664374.1 2222632..2223252(+) (recU) [Bacillus stercoris strain BS21]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAGCAGTCAGAAAAGGGCCCCGTC
ATACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAT
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGACGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTCCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAATGGCAGGAAATCAATTCGAAAAGATGAGTTGGAAGAAGCGGCTTATCCGATTTCTCTTGGATACGCACCTAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.029

100

0.99