Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   QI003_RS09480 Genome accession   NZ_CP124601
Coordinates   1905526..1906662 (-) Length   378 a.a.
NCBI ID   WP_282372175.1    Uniprot ID   -
Organism   Bacillus stercoris strain BS21     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1880228..1908815 1905526..1906662 within 0


Gene organization within MGE regions


Location: 1880228..1908815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI003_RS09315 (QI003_09315) aprX 1880228..1881556 (-) 1329 WP_069149625.1 serine protease AprX -
  QI003_RS09320 (QI003_09320) - 1881779..1882012 (+) 234 WP_014664054.1 hypothetical protein -
  QI003_RS09325 (QI003_09325) - 1882292..1882999 (+) 708 WP_014664055.1 poly-gamma-glutamate hydrolase family protein -
  QI003_RS09330 (QI003_09330) - 1883069..1883521 (+) 453 WP_095432816.1 OsmC family protein -
  QI003_RS09335 (QI003_09335) ebrB 1883535..1883888 (-) 354 WP_069149626.1 multidrug efflux SMR transporter subunit EbrB -
  QI003_RS09340 (QI003_09340) ebrA 1883902..1884219 (-) 318 WP_014664058.1 multidrug efflux SMR transporter subunit EbrA -
  QI003_RS09345 (QI003_09345) - 1884355..1884636 (-) 282 WP_014664059.1 hypothetical protein -
  QI003_RS09350 (QI003_09350) - 1884726..1885139 (+) 414 WP_080478223.1 YmaF family protein -
  QI003_RS09355 (QI003_09355) miaA 1885239..1886183 (+) 945 WP_014664061.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  QI003_RS09360 (QI003_09360) hfq 1886223..1886444 (+) 222 WP_003221097.1 RNA chaperone Hfq -
  QI003_RS09365 (QI003_09365) - 1886645..1886917 (+) 273 WP_040083098.1 YmzC family protein -
  QI003_RS09370 (QI003_09370) - 1886999..1887229 (+) 231 WP_003245262.1 hypothetical protein -
  QI003_RS09375 (QI003_09375) nrdI 1887473..1887865 (+) 393 WP_040083097.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  QI003_RS09380 (QI003_09380) nrdE 1887825..1889927 (+) 2103 WP_040083095.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  QI003_RS09385 (QI003_09385) nrdF 1889945..1890934 (+) 990 WP_014664066.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  QI003_RS09390 (QI003_09390) - 1890983..1891603 (+) 621 WP_282372161.1 hypothetical protein -
  QI003_RS09395 (QI003_09395) cwlC 1891667..1892434 (-) 768 WP_282372163.1 sporulation-specific N-acetylmuramoyl-L-alanine amidase -
  QI003_RS09400 (QI003_09400) - 1892613..1892828 (+) 216 WP_282372166.1 hypothetical protein -
  QI003_RS09405 (QI003_09405) spoVK 1893081..1894049 (+) 969 WP_003231746.1 stage V sporulation protein K -
  QI003_RS09410 (QI003_09410) hflX 1894182..1895444 (+) 1263 WP_040083090.1 GTPase HflX -
  QI003_RS09415 (QI003_09415) - 1895462..1896727 (+) 1266 WP_282374315.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  QI003_RS09420 (QI003_09420) glnR 1896837..1897244 (+) 408 WP_014664075.1 transcriptional repressor GlnR -
  QI003_RS09425 (QI003_09425) glnA 1897303..1898637 (+) 1335 WP_014664076.1 type I glutamate--ammonia ligase -
  QI003_RS09430 (QI003_09430) - 1898722..1898867 (+) 146 Protein_1800 peptidoglycan-binding protein -
  QI003_RS09435 (QI003_09435) - 1898906..1899205 (-) 300 WP_282372170.1 contact-dependent growth inhibition system immunity protein -
  QI003_RS09440 (QI003_09440) - 1899209..1899499 (-) 291 WP_069839412.1 contact-dependent growth inhibition system immunity protein -
  QI003_RS09445 (QI003_09445) - 1899518..1901377 (-) 1860 WP_282372172.1 T7SS effector LXG polymorphic toxin -
  QI003_RS09450 (QI003_09450) - 1902278..1902480 (+) 203 Protein_1804 phage holin family protein -
  QI003_RS09455 (QI003_09455) - 1902523..1903330 (+) 808 Protein_1805 N-acetylmuramoyl-L-alanine amidase -
  QI003_RS09460 (QI003_09460) - 1903993..1904451 (-) 459 WP_282372173.1 SMI1/KNR4 family protein -
  QI003_RS09465 (QI003_09465) - 1904466..1904690 (-) 225 Protein_1807 HNH/ENDO VII family nuclease -
  QI003_RS09470 (QI003_09470) - 1904740..1905318 (+) 579 Protein_1808 UV damage repair protein UvrX -
  QI003_RS09475 (QI003_09475) - 1905360..1905536 (-) 177 WP_282372174.1 aspartate phosphatase -
  QI003_RS09480 (QI003_09480) rapC 1905526..1906662 (-) 1137 WP_282372175.1 tetratricopeptide repeat protein Regulator
  QI003_RS09485 (QI003_09485) - 1906952..1907464 (+) 513 WP_069839407.1 GNAT family protein -
  QI003_RS09490 (QI003_09490) - 1907745..1908386 (+) 642 WP_282372176.1 DUF3885 domain-containing protein -
  QI003_RS09495 (QI003_09495) - 1908651..1908815 (+) 165 WP_003231681.1 hypothetical protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44758.04 Da        Isoelectric Point: 4.8234

>NTDB_id=826614 QI003_RS09480 WP_282372175.1 1905526..1906662(-) (rapC) [Bacillus stercoris strain BS21]
MEQLIPSSAVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMEEDQDLLLYYSLMCFRHQIMLDYLEPKTMNEERPEIS
DLLEKIESNQTDLKGILEYYFNFFRGMYEFEQYEYLNAISFYKQAERKLSLVADEIERAEFHYKVAEIYYHMKQTHMSMH
HIVQAIDSYKAHENYTVRVIQCSFVIGLNYLDMDFPEKAIPHFKDALDKAREIDMSRLIGSSLYNLGLCLFAEEAYEKAA
EYFKEGIRVYQDNGYEHSNRLLDILLMLTKTTFKMRNHSEGTSWCAHGLSLSKDLNDEIMAKMFEFIHALYVDNDKGKLN
SILNYLELKSMFSDVEDLAADAAKYYNEKEDHKVAVVYYEKVLYARKQIQRGDCLYET

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=826614 QI003_RS09480 WP_282372175.1 1905526..1906662(-) (rapC) [Bacillus stercoris strain BS21]
ATGGAGCAATTAATTCCGTCATCCGCAGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCAGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGGAGGAAGACCAAGATTTATTGCTGTACTATT
CTCTCATGTGTTTTCGCCATCAAATAATGCTGGATTACCTTGAACCAAAAACAATGAACGAAGAACGGCCTGAAATTTCA
GACTTATTAGAAAAGATTGAAAGTAACCAAACTGATTTGAAAGGGATTCTTGAATATTATTTTAACTTTTTCCGTGGAAT
GTATGAATTTGAACAATACGAATATCTTAATGCCATAAGCTTCTATAAGCAAGCCGAGAGAAAATTATCACTTGTTGCAG
ATGAGATTGAACGAGCAGAATTCCACTACAAAGTTGCAGAAATTTATTATCATATGAAGCAAACTCATATGTCGATGCAT
CACATTGTTCAAGCAATTGATAGTTATAAAGCACATGAAAACTACACTGTAAGAGTTATTCAATGCTCATTTGTCATCGG
TCTAAACTATTTGGATATGGACTTCCCTGAAAAAGCGATCCCTCATTTTAAAGATGCTCTAGATAAAGCAAGAGAAATCG
ATATGTCACGATTAATCGGATCATCTCTGTACAATCTTGGCTTATGTTTATTTGCTGAGGAAGCTTATGAAAAGGCAGCT
GAGTACTTTAAGGAGGGTATTAGAGTATACCAGGATAATGGGTATGAGCACTCAAATCGTTTATTAGACATCTTACTTAT
GTTGACAAAAACCACATTTAAAATGAGAAATCACTCCGAGGGAACTTCTTGGTGTGCACATGGTCTGTCTTTATCCAAAG
ATTTAAACGATGAGATAATGGCCAAAATGTTTGAATTCATTCATGCCCTATATGTAGATAACGACAAAGGAAAATTAAAT
TCGATTCTAAATTATTTAGAATTAAAGTCAATGTTTTCAGACGTGGAGGATTTAGCAGCAGATGCAGCGAAGTATTACAA
TGAAAAAGAAGACCATAAAGTGGCTGTTGTTTATTATGAGAAAGTGCTTTATGCCCGTAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAACTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(186-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

48.413

100

0.484
  rapF Bacillus subtilis subsp. subtilis str. 168

45.263

100

0.455