Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QI003_RS07825 Genome accession   NZ_CP124601
Coordinates   1525644..1525922 (+) Length   92 a.a.
NCBI ID   WP_014663823.1    Uniprot ID   -
Organism   Bacillus stercoris strain BS21     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1520644..1530922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI003_RS07805 (QI003_07805) - 1521832..1522743 (+) 912 WP_069149532.1 ketopantoate reductase family protein -
  QI003_RS07810 (QI003_07810) - 1522776..1524008 (-) 1233 WP_040083259.1 aminopeptidase -
  QI003_RS07815 (QI003_07815) - 1524119..1524253 (-) 135 WP_003238865.1 protein YkpC -
  QI003_RS07820 (QI003_07820) mreBH 1524354..1525361 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  QI003_RS07825 (QI003_07825) abrB 1525644..1525922 (+) 279 WP_014663823.1 transcriptional regulator AbhA Regulator
  QI003_RS07830 (QI003_07830) kinC 1526113..1527399 (+) 1287 WP_040083258.1 two-component sensor histidine kinase KinC -
  QI003_RS07835 (QI003_07835) - 1527415..1528272 (+) 858 WP_052438163.1 gamma-glutamylcyclotransferase -
  QI003_RS07840 (QI003_07840) ktrC 1528304..1528969 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  QI003_RS07845 (QI003_07845) ade 1529124..1530857 (+) 1734 WP_282374293.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10242.04 Da        Isoelectric Point: 5.8742

>NTDB_id=826609 QI003_RS07825 WP_014663823.1 1525644..1525922(+) (abrB) [Bacillus stercoris strain BS21]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKDYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=826609 QI003_RS07825 WP_014663823.1 1525644..1525922(+) (abrB) [Bacillus stercoris strain BS21]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTTATGCCGATAGAGTTAAGACGGGCACTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGATTACGGCAACGGCAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576