Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   SHN03_RS03870 Genome accession   NZ_CP138566
Coordinates   811198..812280 (+) Length   360 a.a.
NCBI ID   WP_001812923.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AUSMDU00020487     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 806198..817280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHN03_RS03850 gdpS 806568..807638 (-) 1071 WP_048667628.1 GGDEF domain-containing protein GdpS -
  SHN03_RS03855 - 807956..809011 (+) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  SHN03_RS03860 - 809183..809824 (-) 642 WP_000192950.1 YigZ family protein -
  SHN03_RS03865 fakB1 809968..810834 (+) 867 WP_031875144.1 fatty acid kinase binding subunit FakB1 -
  SHN03_RS03870 comFA 811198..812280 (+) 1083 WP_001812923.1 DEAD/DEAH box helicase Machinery gene
  SHN03_RS03875 - 812273..812947 (+) 675 WP_001057970.1 ComF family protein -
  SHN03_RS03880 hpf 813008..813580 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SHN03_RS03885 secA 813995..816526 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  SHN03_RS03890 - 816568..816661 (+) 94 Protein_756 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 41977.44 Da        Isoelectric Point: 9.5935

>NTDB_id=826607 SHN03_RS03870 WP_001812923.1 811198..812280(+) (comFA) [Staphylococcus aureus strain AUSMDU00020487]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSTK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQISNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMILAKKEIQNMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=826607 SHN03_RS03870 WP_001812923.1 811198..812280(+) (comFA) [Staphylococcus aureus strain AUSMDU00020487]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGATATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTAAAGTCATCTACTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAGTAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACGTTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TAGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCCACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCTAGCTAAAAAAGAGATTCAAAA
TATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367