Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   QI003_RS06215 Genome accession   NZ_CP124601
Coordinates   1238313..1239464 (+) Length   383 a.a.
NCBI ID   WP_282374183.1    Uniprot ID   -
Organism   Bacillus stercoris strain BS21     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1233313..1244464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI003_RS06185 (QI003_06185) - 1233988..1235202 (+) 1215 WP_282374338.1 MFS transporter -
  QI003_RS06190 (QI003_06190) - 1235369..1235947 (+) 579 WP_003244921.1 GNAT family N-acetyltransferase -
  QI003_RS06195 (QI003_06195) spx 1236128..1236523 (+) 396 WP_003245483.1 transcriptional regulator Spx -
  QI003_RS06200 (QI003_06200) - 1236566..1237222 (-) 657 WP_040083448.1 TerC family protein -
  QI003_RS06205 (QI003_06205) - 1237392..1237532 (+) 141 WP_134975725.1 hypothetical protein -
  QI003_RS06210 (QI003_06210) mecA 1237499..1238155 (+) 657 WP_003232942.1 adaptor protein MecA Regulator
  QI003_RS06215 (QI003_06215) coiA 1238313..1239464 (+) 1152 WP_282374183.1 competence protein CoiA Machinery gene
  QI003_RS06220 (QI003_06220) pepF 1239694..1241523 (+) 1830 WP_282374184.1 oligoendopeptidase F -
  QI003_RS06225 (QI003_06225) - 1241562..1241729 (-) 168 WP_003244944.1 hypothetical protein -
  QI003_RS06230 (QI003_06230) spxH 1242043..1242942 (-) 900 WP_041521296.1 protease adaptor protein SpxH -
  QI003_RS06235 (QI003_06235) - 1242939..1243337 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  QI003_RS06240 (QI003_06240) cwlQ 1243597..1244331 (-) 735 WP_282374185.1 bifunctional muramidase/murein lytic transglycosylase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 44812.95 Da        Isoelectric Point: 9.9372

>NTDB_id=826603 QI003_RS06215 WP_282374183.1 1238313..1239464(+) (coiA) [Bacillus stercoris strain BS21]
MFSAVTEDGQMFHLLGAQQSQKLKRKRFFCPVCGEELAVKLGLQKAPHFAHKQNKSCSIDIEPESAYHLEGKRQLYVWLK
TQKASPILEPYIREINQRPDVLARIKERMLAVEYQCATISPDVFQKRTEGFKQAGIIPQWIMGRSRLQRTASSFYQLSAF
HWQFINANPYRELISYCPERRSFLRLSHIIPFYTTHSYSSVQTIPIHRAGIDDLFFTKSKSPIQYSGWAKAIHRFRHKPH
RFSSKETNRLKQLFYEKRQTPFSFLPTEVFVPVVKGAVFKSPVFVWQGFLYLFITDLGEKHAPIRFSAVLQQCKLHIHKK
NIALRCECSEECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPADGIRSMQDLIERDRSCFIE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=826603 QI003_RS06215 WP_282374183.1 1238313..1239464(+) (coiA) [Bacillus stercoris strain BS21]
TTGTTTAGTGCTGTGACTGAAGACGGTCAAATGTTTCACCTTTTAGGCGCTCAGCAAAGCCAAAAATTAAAGCGGAAACG
ATTCTTCTGTCCGGTATGCGGAGAAGAGCTTGCTGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTCGCCCATAAACAGA
ACAAGTCCTGCTCCATAGACATAGAACCGGAAAGCGCCTACCATTTAGAAGGAAAAAGACAGCTGTACGTATGGCTGAAA
ACGCAAAAGGCTTCTCCCATATTGGAACCGTATATAAGGGAAATCAACCAAAGACCGGACGTCTTGGCAAGGATCAAGGA
GCGTATGCTTGCTGTTGAATATCAATGTGCCACGATCAGCCCGGATGTCTTTCAAAAGCGGACAGAGGGCTTCAAACAAG
CAGGGATCATCCCGCAGTGGATTATGGGCCGCAGCCGCTTACAACGGACTGCTTCGTCCTTTTATCAGCTTTCAGCTTTT
CATTGGCAGTTTATCAATGCAAACCCATACAGAGAACTGATATCTTATTGTCCGGAAAGGCGTTCTTTTCTCCGGCTCAG
CCACATCATTCCATTCTACACAACCCATTCTTATTCCTCAGTCCAAACGATCCCTATCCATCGGGCAGGTATAGACGATC
TTTTTTTCACAAAATCGAAATCCCCAATTCAATATTCAGGCTGGGCGAAAGCGATTCACCGTTTTCGCCATAAACCCCAT
CGGTTTAGCTCAAAGGAAACAAACCGCCTTAAGCAGCTGTTTTATGAGAAGCGGCAGACGCCTTTTTCTTTTCTGCCGAC
TGAAGTGTTTGTTCCTGTTGTAAAAGGGGCAGTTTTTAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTTTACCTGTTTA
TCACGGATCTTGGAGAGAAACATGCGCCAATTCGTTTTTCAGCCGTTTTACAGCAATGCAAACTGCACATTCATAAAAAG
AACATTGCACTCAGATGCGAATGCAGCGAAGAGTGTCTTTCTGAAGCTGTTAAACAGTACATTGATTTTTTGTGTAAGAA
GGGATTTTTAAGGGAGACTCAGAAAGAAGTATATGTGCTGAACCAGCCTGCAGATGGCATTCGCTCAATGCAGGATCTCA
TAGAAAGAGACCGCAGCTGTTTTATAGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

90.885

97.389

0.885